Results 21 - 40 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15817 | 3' | -55.1 | NC_004065.1 | + | 198783 | 0.66 | 0.963561 |
Target: 5'- --aCGGGAucaGGgCCUCuuCGCAACACAg -3' miRNA: 3'- gagGUCCU---UCgGGAGu-GCGUUGUGUg -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 71594 | 0.66 | 0.963561 |
Target: 5'- aUCCAGcuGuaCCUgUACGCGACGCACg -3' miRNA: 3'- gAGGUCcuUcgGGA-GUGCGUUGUGUG- -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 101113 | 0.67 | 0.929919 |
Target: 5'- -gCCGuaaacGGAGcccucGCCCUCGCGUcGCACGCc -3' miRNA: 3'- gaGGU-----CCUU-----CGGGAGUGCGuUGUGUG- -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 229557 | 0.67 | 0.944238 |
Target: 5'- -gCCcGGAGGCUgaCUCAgGCgAGCGCGCg -3' miRNA: 3'- gaGGuCCUUCGG--GAGUgCG-UUGUGUG- -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 195146 | 0.67 | 0.94855 |
Target: 5'- -aCUuGGAcaGGUCCacgcCGCGCAGCACGCg -3' miRNA: 3'- gaGGuCCU--UCGGGa---GUGCGUUGUGUG- -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 88581 | 0.67 | 0.94855 |
Target: 5'- uCUCgGGGAugucGCCCUCGuCGCGGCccucCAUg -3' miRNA: 3'- -GAGgUCCUu---CGGGAGU-GCGUUGu---GUG- -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 229600 | 0.67 | 0.943795 |
Target: 5'- gCUCCAGGggGuucacccCCCggGCGCGGaaaaACACc -3' miRNA: 3'- -GAGGUCCuuC-------GGGagUGCGUUg---UGUG- -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 119810 | 0.67 | 0.93829 |
Target: 5'- -gCCGGcGAAGCCCUCuucccucucgacggGCGgCGGCGCGu -3' miRNA: 3'- gaGGUC-CUUCGGGAG--------------UGC-GUUGUGUg -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 28663 | 0.67 | 0.929919 |
Target: 5'- -cCCGGcGAGGCgcagCUCGCGCAGCAguuCGCg -3' miRNA: 3'- gaGGUC-CUUCGg---GAGUGCGUUGU---GUG- -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 230012 | 0.67 | 0.934924 |
Target: 5'- -cCCcGGggGCCCgCGCGCAcuCAgACg -3' miRNA: 3'- gaGGuCCuuCGGGaGUGCGUu-GUgUG- -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 6888 | 0.67 | 0.9429 |
Target: 5'- -gCCGGGAugcucGCCCUCaucuACGCGGCggcuucagcugcggGCACg -3' miRNA: 3'- gaGGUCCUu----CGGGAG----UGCGUUG--------------UGUG- -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 86907 | 0.67 | 0.944238 |
Target: 5'- -gCCGGucucGCCCUCG-GCGGCGCGCg -3' miRNA: 3'- gaGGUCcuu-CGGGAGUgCGUUGUGUG- -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 139479 | 0.67 | 0.944238 |
Target: 5'- uUCgAGGggGCCgUCGgGCGGgACGa -3' miRNA: 3'- gAGgUCCuuCGGgAGUgCGUUgUGUg -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 166979 | 0.67 | 0.94855 |
Target: 5'- gUCCGGGAucGUcgCCUCGCGCGcCGgACa -3' miRNA: 3'- gAGGUCCUu-CG--GGAGUGCGUuGUgUG- -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 128410 | 0.67 | 0.94855 |
Target: 5'- -cCCGGGuccGCCCcguuuUCAuaUGCGACGCGCg -3' miRNA: 3'- gaGGUCCuu-CGGG-----AGU--GCGUUGUGUG- -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 169152 | 0.67 | 0.950211 |
Target: 5'- --gCGGGAauacgagggccugauGGCCUUCGCGguCAACACGCc -3' miRNA: 3'- gagGUCCU---------------UCGGGAGUGC--GUUGUGUG- -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 196648 | 0.67 | 0.929919 |
Target: 5'- aUCCAGG-GGCCaguagCGCGCGGCGucucuCACg -3' miRNA: 3'- gAGGUCCuUCGGga---GUGCGUUGU-----GUG- -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 147495 | 0.67 | 0.939697 |
Target: 5'- gUCCAGccccuggacGggGCCCUgCACGaCAACAUcuGCu -3' miRNA: 3'- gAGGUC---------CuuCGGGA-GUGC-GUUGUG--UG- -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 229159 | 0.67 | 0.939697 |
Target: 5'- --gCGGGgcGCCCUCGCccgGCAGuCAUGCg -3' miRNA: 3'- gagGUCCuuCGGGAGUG---CGUU-GUGUG- -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 61937 | 0.67 | 0.939697 |
Target: 5'- --aCGGGGAGCCCg---GCGAUGCGCa -3' miRNA: 3'- gagGUCCUUCGGGagugCGUUGUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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