miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15817 3' -55.1 NC_004065.1 + 106814 1.1 0.003922
Target:  5'- cCUCCAGGAAGCCCUCACGCAACACACg -3'
miRNA:   3'- -GAGGUCCUUCGGGAGUGCGUUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 119702 0.82 0.261259
Target:  5'- uCUCCuGGAAggguaccaucauGCCCUCGuCGCGACACACg -3'
miRNA:   3'- -GAGGuCCUU------------CGGGAGU-GCGUUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 31519 0.76 0.50844
Target:  5'- --gUAGGAcGCCCUCACGCAGguCGCGCu -3'
miRNA:   3'- gagGUCCUuCGGGAGUGCGUU--GUGUG- -5'
15817 3' -55.1 NC_004065.1 + 202247 0.74 0.627602
Target:  5'- --gCAGGAGGCCCUCcagACGgCGGCGCAg -3'
miRNA:   3'- gagGUCCUUCGGGAG---UGC-GUUGUGUg -5'
15817 3' -55.1 NC_004065.1 + 87171 0.73 0.682066
Target:  5'- gUCCAGGAgccccugcaccgcgcGGUCgUCGCGCGAC-CGCa -3'
miRNA:   3'- gAGGUCCU---------------UCGGgAGUGCGUUGuGUG- -5'
15817 3' -55.1 NC_004065.1 + 132985 0.73 0.698037
Target:  5'- -aCCAGGAgAGCUCgcaCGCGCAGCACcCa -3'
miRNA:   3'- gaGGUCCU-UCGGGa--GUGCGUUGUGuG- -5'
15817 3' -55.1 NC_004065.1 + 47890 0.73 0.698037
Target:  5'- -gCCAcGAAGCCCUCGCGC-ACugAUu -3'
miRNA:   3'- gaGGUcCUUCGGGAGUGCGuUGugUG- -5'
15817 3' -55.1 NC_004065.1 + 90585 0.72 0.717803
Target:  5'- uCUCCAGGuccGCCCgCAUagcguccuugaGCAGCGCACu -3'
miRNA:   3'- -GAGGUCCuu-CGGGaGUG-----------CGUUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 80963 0.72 0.727583
Target:  5'- cCUCgGGGGAGCCCUCcACcaagaggguggaGUAGCACAg -3'
miRNA:   3'- -GAGgUCCUUCGGGAG-UG------------CGUUGUGUg -5'
15817 3' -55.1 NC_004065.1 + 201382 0.72 0.727583
Target:  5'- -gCCGGGggGUgC-CACGuCGACGCACa -3'
miRNA:   3'- gaGGUCCuuCGgGaGUGC-GUUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 146102 0.72 0.731472
Target:  5'- --aCAGGAAGCUccgccgcggcuucguCUCACGCGACAuCACc -3'
miRNA:   3'- gagGUCCUUCGG---------------GAGUGCGUUGU-GUG- -5'
15817 3' -55.1 NC_004065.1 + 137935 0.72 0.737282
Target:  5'- -gCCGGGcucgGAGCUgCUgGCGCAACGCGCg -3'
miRNA:   3'- gaGGUCC----UUCGG-GAgUGCGUUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 136394 0.71 0.775096
Target:  5'- aCUCCAGG-AGCCCgucUACGUGAUGCGu -3'
miRNA:   3'- -GAGGUCCuUCGGGa--GUGCGUUGUGUg -5'
15817 3' -55.1 NC_004065.1 + 207632 0.71 0.79329
Target:  5'- -aCCAGGGacAGCUC-CAUGCcGCACGCg -3'
miRNA:   3'- gaGGUCCU--UCGGGaGUGCGuUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 71973 0.71 0.79329
Target:  5'- -gCCGGGcAGCCCggAgGCGACGCAUg -3'
miRNA:   3'- gaGGUCCuUCGGGagUgCGUUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 158821 0.71 0.802178
Target:  5'- aCUUCAGGAGGCUCgUCuucaGCAGCuGCGCg -3'
miRNA:   3'- -GAGGUCCUUCGGG-AGug--CGUUG-UGUG- -5'
15817 3' -55.1 NC_004065.1 + 195437 0.7 0.810915
Target:  5'- -gCCAGGAAcGgCgUCGCGgAGCGCACg -3'
miRNA:   3'- gaGGUCCUU-CgGgAGUGCgUUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 126364 0.7 0.819494
Target:  5'- gUCCAGGAuGCUCUC-CGUcACGCAg -3'
miRNA:   3'- gAGGUCCUuCGGGAGuGCGuUGUGUg -5'
15817 3' -55.1 NC_004065.1 + 162463 0.7 0.819494
Target:  5'- gCUUCGGcGAAGgCCUCGCGCGGC-CGg -3'
miRNA:   3'- -GAGGUC-CUUCgGGAGUGCGUUGuGUg -5'
15817 3' -55.1 NC_004065.1 + 43238 0.7 0.819494
Target:  5'- gUCCGGGGAGCUUUCAUcaaGCGccCGCGCa -3'
miRNA:   3'- gAGGUCCUUCGGGAGUG---CGUu-GUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.