miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15817 3' -55.1 NC_004065.1 + 124718 0.7 0.827907
Target:  5'- gCUUCAGGuucAGGCCC--GCGCcGCACGCg -3'
miRNA:   3'- -GAGGUCC---UUCGGGagUGCGuUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 32670 0.7 0.836146
Target:  5'- cCUCgCGGGcgcGGUUCUCGCGCAGCGCc- -3'
miRNA:   3'- -GAG-GUCCu--UCGGGAGUGCGUUGUGug -5'
15817 3' -55.1 NC_004065.1 + 189695 0.69 0.859748
Target:  5'- aUCCGGGGAuGuCCCUCcACGaCGACACcgGCa -3'
miRNA:   3'- gAGGUCCUU-C-GGGAG-UGC-GUUGUG--UG- -5'
15817 3' -55.1 NC_004065.1 + 45870 0.69 0.867222
Target:  5'- gCUCCgacggAGGAAGacCCCagACGCGACACGa -3'
miRNA:   3'- -GAGG-----UCCUUC--GGGagUGCGUUGUGUg -5'
15817 3' -55.1 NC_004065.1 + 35365 0.69 0.87449
Target:  5'- cCUCgucgaAGGAGcugccauugcacGCCCUgGCGCAGCGCAa -3'
miRNA:   3'- -GAGg----UCCUU------------CGGGAgUGCGUUGUGUg -5'
15817 3' -55.1 NC_004065.1 + 176637 0.69 0.881545
Target:  5'- gUCCGGGGA-CCCUCACucuuGCAuCugGCg -3'
miRNA:   3'- gAGGUCCUUcGGGAGUG----CGUuGugUG- -5'
15817 3' -55.1 NC_004065.1 + 127891 0.68 0.895003
Target:  5'- -gCCGGGucuGCCUccgCACGCAGCGCu- -3'
miRNA:   3'- gaGGUCCuu-CGGGa--GUGCGUUGUGug -5'
15817 3' -55.1 NC_004065.1 + 117416 0.68 0.899503
Target:  5'- aUCCAGGAcuaccuGaCCUUCacgggcacguugcgACGCAGCACGCc -3'
miRNA:   3'- gAGGUCCUu-----C-GGGAG--------------UGCGUUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 126275 0.68 0.913502
Target:  5'- gUCC-GGAGGCCCcgcCGCGCGAaccgACGCc -3'
miRNA:   3'- gAGGuCCUUCGGGa--GUGCGUUg---UGUG- -5'
15817 3' -55.1 NC_004065.1 + 168159 0.68 0.913502
Target:  5'- -gUCAGcAGGCCCUucCGCGCGGgGCGCg -3'
miRNA:   3'- gaGGUCcUUCGGGA--GUGCGUUgUGUG- -5'
15817 3' -55.1 NC_004065.1 + 198503 0.68 0.919207
Target:  5'- -gCCGGGGuAGCCC-CGCgGCAcguCGCACg -3'
miRNA:   3'- gaGGUCCU-UCGGGaGUG-CGUu--GUGUG- -5'
15817 3' -55.1 NC_004065.1 + 51166 0.68 0.919207
Target:  5'- uCUCgAGGAAGCCCaugucCACGUuuugguggaggGugGCGCg -3'
miRNA:   3'- -GAGgUCCUUCGGGa----GUGCG-----------UugUGUG- -5'
15817 3' -55.1 NC_004065.1 + 208493 0.68 0.919207
Target:  5'- -aCCAGGAuaacCCCcCACGUucGCACACg -3'
miRNA:   3'- gaGGUCCUuc--GGGaGUGCGu-UGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 46476 0.68 0.92468
Target:  5'- aCUCCAGGAa--CCUCGC-CGGCAuCACc -3'
miRNA:   3'- -GAGGUCCUucgGGAGUGcGUUGU-GUG- -5'
15817 3' -55.1 NC_004065.1 + 63486 0.68 0.92468
Target:  5'- -gCCAGGc-GCCgUCGCGCAGC-CAg -3'
miRNA:   3'- gaGGUCCuuCGGgAGUGCGUUGuGUg -5'
15817 3' -55.1 NC_004065.1 + 196648 0.67 0.929919
Target:  5'- aUCCAGG-GGCCaguagCGCGCGGCGucucuCACg -3'
miRNA:   3'- gAGGUCCuUCGGga---GUGCGUUGU-----GUG- -5'
15817 3' -55.1 NC_004065.1 + 101113 0.67 0.929919
Target:  5'- -gCCGuaaacGGAGcccucGCCCUCGCGUcGCACGCc -3'
miRNA:   3'- gaGGU-----CCUU-----CGGGAGUGCGuUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 28663 0.67 0.929919
Target:  5'- -cCCGGcGAGGCgcagCUCGCGCAGCAguuCGCg -3'
miRNA:   3'- gaGGUC-CUUCGg---GAGUGCGUUGU---GUG- -5'
15817 3' -55.1 NC_004065.1 + 230012 0.67 0.934924
Target:  5'- -cCCcGGggGCCCgCGCGCAcuCAgACg -3'
miRNA:   3'- gaGGuCCuuCGGGaGUGCGUu-GUgUG- -5'
15817 3' -55.1 NC_004065.1 + 119810 0.67 0.93829
Target:  5'- -gCCGGcGAAGCCCUCuucccucucgacggGCGgCGGCGCGu -3'
miRNA:   3'- gaGGUC-CUUCGGGAG--------------UGC-GUUGUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.