miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15817 3' -55.1 NC_004065.1 + 20697 0.66 0.952635
Target:  5'- -aCCGGGcAGUCCcCA-GUAGCACACg -3'
miRNA:   3'- gaGGUCCuUCGGGaGUgCGUUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 226436 0.66 0.952635
Target:  5'- uCUCCAGGAgAGUCCUCGC-CGAUcgAgACc -3'
miRNA:   3'- -GAGGUCCU-UCGGGAGUGcGUUG--UgUG- -5'
15817 3' -55.1 NC_004065.1 + 169152 0.67 0.950211
Target:  5'- --gCGGGAauacgagggccugauGGCCUUCGCGguCAACACGCc -3'
miRNA:   3'- gagGUCCU---------------UCGGGAGUGC--GUUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 195146 0.67 0.94855
Target:  5'- -aCUuGGAcaGGUCCacgcCGCGCAGCACGCg -3'
miRNA:   3'- gaGGuCCU--UCGGGa---GUGCGUUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 128410 0.67 0.94855
Target:  5'- -cCCGGGuccGCCCcguuuUCAuaUGCGACGCGCg -3'
miRNA:   3'- gaGGUCCuu-CGGG-----AGU--GCGUUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 166979 0.67 0.94855
Target:  5'- gUCCGGGAucGUcgCCUCGCGCGcCGgACa -3'
miRNA:   3'- gAGGUCCUu-CG--GGAGUGCGUuGUgUG- -5'
15817 3' -55.1 NC_004065.1 + 88581 0.67 0.94855
Target:  5'- uCUCgGGGAugucGCCCUCGuCGCGGCccucCAUg -3'
miRNA:   3'- -GAGgUCCUu---CGGGAGU-GCGUUGu---GUG- -5'
15817 3' -55.1 NC_004065.1 + 139479 0.67 0.944238
Target:  5'- uUCgAGGggGCCgUCGgGCGGgACGa -3'
miRNA:   3'- gAGgUCCuuCGGgAGUgCGUUgUGUg -5'
15817 3' -55.1 NC_004065.1 + 86907 0.67 0.944238
Target:  5'- -gCCGGucucGCCCUCG-GCGGCGCGCg -3'
miRNA:   3'- gaGGUCcuu-CGGGAGUgCGUUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 229557 0.67 0.944238
Target:  5'- -gCCcGGAGGCUgaCUCAgGCgAGCGCGCg -3'
miRNA:   3'- gaGGuCCUUCGG--GAGUgCG-UUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 229600 0.67 0.943795
Target:  5'- gCUCCAGGggGuucacccCCCggGCGCGGaaaaACACc -3'
miRNA:   3'- -GAGGUCCuuC-------GGGagUGCGUUg---UGUG- -5'
15817 3' -55.1 NC_004065.1 + 6888 0.67 0.9429
Target:  5'- -gCCGGGAugcucGCCCUCaucuACGCGGCggcuucagcugcggGCACg -3'
miRNA:   3'- gaGGUCCUu----CGGGAG----UGCGUUG--------------UGUG- -5'
15817 3' -55.1 NC_004065.1 + 147495 0.67 0.939697
Target:  5'- gUCCAGccccuggacGggGCCCUgCACGaCAACAUcuGCu -3'
miRNA:   3'- gAGGUC---------CuuCGGGA-GUGC-GUUGUG--UG- -5'
15817 3' -55.1 NC_004065.1 + 229159 0.67 0.939697
Target:  5'- --gCGGGgcGCCCUCGCccgGCAGuCAUGCg -3'
miRNA:   3'- gagGUCCuuCGGGAGUG---CGUU-GUGUG- -5'
15817 3' -55.1 NC_004065.1 + 61937 0.67 0.939697
Target:  5'- --aCGGGGAGCCCg---GCGAUGCGCa -3'
miRNA:   3'- gagGUCCUUCGGGagugCGUUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 119810 0.67 0.93829
Target:  5'- -gCCGGcGAAGCCCUCuucccucucgacggGCGgCGGCGCGu -3'
miRNA:   3'- gaGGUC-CUUCGGGAG--------------UGC-GUUGUGUg -5'
15817 3' -55.1 NC_004065.1 + 230012 0.67 0.934924
Target:  5'- -cCCcGGggGCCCgCGCGCAcuCAgACg -3'
miRNA:   3'- gaGGuCCuuCGGGaGUGCGUu-GUgUG- -5'
15817 3' -55.1 NC_004065.1 + 101113 0.67 0.929919
Target:  5'- -gCCGuaaacGGAGcccucGCCCUCGCGUcGCACGCc -3'
miRNA:   3'- gaGGU-----CCUU-----CGGGAGUGCGuUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 28663 0.67 0.929919
Target:  5'- -cCCGGcGAGGCgcagCUCGCGCAGCAguuCGCg -3'
miRNA:   3'- gaGGUC-CUUCGg---GAGUGCGUUGU---GUG- -5'
15817 3' -55.1 NC_004065.1 + 196648 0.67 0.929919
Target:  5'- aUCCAGG-GGCCaguagCGCGCGGCGucucuCACg -3'
miRNA:   3'- gAGGUCCuUCGGga---GUGCGUUGU-----GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.