miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15817 3' -55.1 NC_004065.1 + 6888 0.67 0.9429
Target:  5'- -gCCGGGAugcucGCCCUCaucuACGCGGCggcuucagcugcggGCACg -3'
miRNA:   3'- gaGGUCCUu----CGGGAG----UGCGUUG--------------UGUG- -5'
15817 3' -55.1 NC_004065.1 + 20697 0.66 0.952635
Target:  5'- -aCCGGGcAGUCCcCA-GUAGCACACg -3'
miRNA:   3'- gaGGUCCuUCGGGaGUgCGUUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 28663 0.67 0.929919
Target:  5'- -cCCGGcGAGGCgcagCUCGCGCAGCAguuCGCg -3'
miRNA:   3'- gaGGUC-CUUCGg---GAGUGCGUUGU---GUG- -5'
15817 3' -55.1 NC_004065.1 + 31519 0.76 0.50844
Target:  5'- --gUAGGAcGCCCUCACGCAGguCGCGCu -3'
miRNA:   3'- gagGUCCUuCGGGAGUGCGUU--GUGUG- -5'
15817 3' -55.1 NC_004065.1 + 32670 0.7 0.836146
Target:  5'- cCUCgCGGGcgcGGUUCUCGCGCAGCGCc- -3'
miRNA:   3'- -GAG-GUCCu--UCGGGAGUGCGUUGUGug -5'
15817 3' -55.1 NC_004065.1 + 35365 0.69 0.87449
Target:  5'- cCUCgucgaAGGAGcugccauugcacGCCCUgGCGCAGCGCAa -3'
miRNA:   3'- -GAGg----UCCUU------------CGGGAgUGCGUUGUGUg -5'
15817 3' -55.1 NC_004065.1 + 35870 0.66 0.966775
Target:  5'- aUCCcgAGGAAGCCUUCGaaucccuguCGgGACAgACg -3'
miRNA:   3'- gAGG--UCCUUCGGGAGU---------GCgUUGUgUG- -5'
15817 3' -55.1 NC_004065.1 + 43238 0.7 0.819494
Target:  5'- gUCCGGGGAGCUUUCAUcaaGCGccCGCGCa -3'
miRNA:   3'- gAGGUCCUUCGGGAGUG---CGUu-GUGUG- -5'
15817 3' -55.1 NC_004065.1 + 45870 0.69 0.867222
Target:  5'- gCUCCgacggAGGAAGacCCCagACGCGACACGa -3'
miRNA:   3'- -GAGG-----UCCUUC--GGGagUGCGUUGUGUg -5'
15817 3' -55.1 NC_004065.1 + 46476 0.68 0.92468
Target:  5'- aCUCCAGGAa--CCUCGC-CGGCAuCACc -3'
miRNA:   3'- -GAGGUCCUucgGGAGUGcGUUGU-GUG- -5'
15817 3' -55.1 NC_004065.1 + 47890 0.73 0.698037
Target:  5'- -gCCAcGAAGCCCUCGCGC-ACugAUu -3'
miRNA:   3'- gaGGUcCUUCGGGAGUGCGuUGugUG- -5'
15817 3' -55.1 NC_004065.1 + 51166 0.68 0.919207
Target:  5'- uCUCgAGGAAGCCCaugucCACGUuuugguggaggGugGCGCg -3'
miRNA:   3'- -GAGgUCCUUCGGGa----GUGCG-----------UugUGUG- -5'
15817 3' -55.1 NC_004065.1 + 61937 0.67 0.939697
Target:  5'- --aCGGGGAGCCCg---GCGAUGCGCa -3'
miRNA:   3'- gagGUCCUUCGGGagugCGUUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 61980 0.66 0.952635
Target:  5'- -aCCAGGAgcagcaccagcAGCCCcCGCG-AACACAg -3'
miRNA:   3'- gaGGUCCU-----------UCGGGaGUGCgUUGUGUg -5'
15817 3' -55.1 NC_004065.1 + 63486 0.68 0.92468
Target:  5'- -gCCAGGc-GCCgUCGCGCAGC-CAg -3'
miRNA:   3'- gaGGUCCuuCGGgAGUGCGUUGuGUg -5'
15817 3' -55.1 NC_004065.1 + 71594 0.66 0.963561
Target:  5'- aUCCAGcuGuaCCUgUACGCGACGCACg -3'
miRNA:   3'- gAGGUCcuUcgGGA-GUGCGUUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 71973 0.71 0.79329
Target:  5'- -gCCGGGcAGCCCggAgGCGACGCAUg -3'
miRNA:   3'- gaGGUCCuUCGGGagUgCGUUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 80963 0.72 0.727583
Target:  5'- cCUCgGGGGAGCCCUCcACcaagaggguggaGUAGCACAg -3'
miRNA:   3'- -GAGgUCCUUCGGGAG-UG------------CGUUGUGUg -5'
15817 3' -55.1 NC_004065.1 + 82541 0.66 0.959782
Target:  5'- gUCCAGGGgcuggacGGCCaC-CAUGCGGC-CGCa -3'
miRNA:   3'- gAGGUCCU-------UCGG-GaGUGCGUUGuGUG- -5'
15817 3' -55.1 NC_004065.1 + 83039 0.66 0.969784
Target:  5'- aUCCAGGGGuaaCCCUCGucuuCGCAggcguccaugACGCGCu -3'
miRNA:   3'- gAGGUCCUUc--GGGAGU----GCGU----------UGUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.