miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15817 3' -55.1 NC_004065.1 + 86907 0.67 0.944238
Target:  5'- -gCCGGucucGCCCUCG-GCGGCGCGCg -3'
miRNA:   3'- gaGGUCcuu-CGGGAGUgCGUUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 87171 0.73 0.682066
Target:  5'- gUCCAGGAgccccugcaccgcgcGGUCgUCGCGCGAC-CGCa -3'
miRNA:   3'- gAGGUCCU---------------UCGGgAGUGCGUUGuGUG- -5'
15817 3' -55.1 NC_004065.1 + 88581 0.67 0.94855
Target:  5'- uCUCgGGGAugucGCCCUCGuCGCGGCccucCAUg -3'
miRNA:   3'- -GAGgUCCUu---CGGGAGU-GCGUUGu---GUG- -5'
15817 3' -55.1 NC_004065.1 + 90585 0.72 0.717803
Target:  5'- uCUCCAGGuccGCCCgCAUagcguccuugaGCAGCGCACu -3'
miRNA:   3'- -GAGGUCCuu-CGGGaGUG-----------CGUUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 94997 0.66 0.952635
Target:  5'- uCUCCgaaaaAGcGGAGCCCuUCGCGCAGaaguCugACg -3'
miRNA:   3'- -GAGG-----UC-CUUCGGG-AGUGCGUU----GugUG- -5'
15817 3' -55.1 NC_004065.1 + 100127 0.66 0.956495
Target:  5'- -gCCAGGccccgaucaGGGUCCgccgcagCGCGCGGCACAg -3'
miRNA:   3'- gaGGUCC---------UUCGGGa------GUGCGUUGUGUg -5'
15817 3' -55.1 NC_004065.1 + 100881 0.66 0.963561
Target:  5'- -cCCAGGuAGUUCUCcucCGCcGCGCACu -3'
miRNA:   3'- gaGGUCCuUCGGGAGu--GCGuUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 101113 0.67 0.929919
Target:  5'- -gCCGuaaacGGAGcccucGCCCUCGCGUcGCACGCc -3'
miRNA:   3'- gaGGU-----CCUU-----CGGGAGUGCGuUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 103238 0.66 0.960136
Target:  5'- -aCCAGGcAGCUgCUCGCGUccucuuCACACa -3'
miRNA:   3'- gaGGUCCuUCGG-GAGUGCGuu----GUGUG- -5'
15817 3' -55.1 NC_004065.1 + 106814 1.1 0.003922
Target:  5'- cCUCCAGGAAGCCCUCACGCAACACACg -3'
miRNA:   3'- -GAGGUCCUUCGGGAGUGCGUUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 117416 0.68 0.899503
Target:  5'- aUCCAGGAcuaccuGaCCUUCacgggcacguugcgACGCAGCACGCc -3'
miRNA:   3'- gAGGUCCUu-----C-GGGAG--------------UGCGUUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 119702 0.82 0.261259
Target:  5'- uCUCCuGGAAggguaccaucauGCCCUCGuCGCGACACACg -3'
miRNA:   3'- -GAGGuCCUU------------CGGGAGU-GCGUUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 119810 0.67 0.93829
Target:  5'- -gCCGGcGAAGCCCUCuucccucucgacggGCGgCGGCGCGu -3'
miRNA:   3'- gaGGUC-CUUCGGGAG--------------UGC-GUUGUGUg -5'
15817 3' -55.1 NC_004065.1 + 121079 0.66 0.964872
Target:  5'- -cCCAGGucgucggcguacuGCCgCagGCGCAGCGCGCu -3'
miRNA:   3'- gaGGUCCuu-----------CGG-GagUGCGUUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 123747 0.66 0.960136
Target:  5'- cCUCCGGuccAGCaCCUCgguGCGCcGCGCGCc -3'
miRNA:   3'- -GAGGUCcu-UCG-GGAG---UGCGuUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 124718 0.7 0.827907
Target:  5'- gCUUCAGGuucAGGCCC--GCGCcGCACGCg -3'
miRNA:   3'- -GAGGUCC---UUCGGGagUGCGuUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 126275 0.68 0.913502
Target:  5'- gUCC-GGAGGCCCcgcCGCGCGAaccgACGCc -3'
miRNA:   3'- gAGGuCCUUCGGGa--GUGCGUUg---UGUG- -5'
15817 3' -55.1 NC_004065.1 + 126364 0.7 0.819494
Target:  5'- gUCCAGGAuGCUCUC-CGUcACGCAg -3'
miRNA:   3'- gAGGUCCUuCGGGAGuGCGuUGUGUg -5'
15817 3' -55.1 NC_004065.1 + 127891 0.68 0.895003
Target:  5'- -gCCGGGucuGCCUccgCACGCAGCGCu- -3'
miRNA:   3'- gaGGUCCuu-CGGGa--GUGCGUUGUGug -5'
15817 3' -55.1 NC_004065.1 + 128410 0.67 0.94855
Target:  5'- -cCCGGGuccGCCCcguuuUCAuaUGCGACGCGCg -3'
miRNA:   3'- gaGGUCCuu-CGGG-----AGU--GCGUUGUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.