Results 41 - 60 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15817 | 3' | -55.1 | NC_004065.1 | + | 132823 | 0.66 | 0.966775 |
Target: 5'- -cCCAGGcuGGCCUaCagGCGCAGCGCGa -3' miRNA: 3'- gaGGUCCu-UCGGGaG--UGCGUUGUGUg -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 132985 | 0.73 | 0.698037 |
Target: 5'- -aCCAGGAgAGCUCgcaCGCGCAGCACcCa -3' miRNA: 3'- gaGGUCCU-UCGGGa--GUGCGUUGUGuG- -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 135475 | 0.66 | 0.956495 |
Target: 5'- -cCCAGGAGGUCaccggCUCGCGCAGguuCGCc -3' miRNA: 3'- gaGGUCCUUCGG-----GAGUGCGUUgu-GUG- -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 136394 | 0.71 | 0.775096 |
Target: 5'- aCUCCAGG-AGCCCgucUACGUGAUGCGu -3' miRNA: 3'- -GAGGUCCuUCGGGa--GUGCGUUGUGUg -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 137935 | 0.72 | 0.737282 |
Target: 5'- -gCCGGGcucgGAGCUgCUgGCGCAACGCGCg -3' miRNA: 3'- gaGGUCC----UUCGG-GAgUGCGUUGUGUG- -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 138711 | 0.66 | 0.956495 |
Target: 5'- aUCguGGAgcGGUCCUCAgGUucgugGACACGCc -3' miRNA: 3'- gAGguCCU--UCGGGAGUgCG-----UUGUGUG- -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 139479 | 0.67 | 0.944238 |
Target: 5'- uUCgAGGggGCCgUCGgGCGGgACGa -3' miRNA: 3'- gAGgUCCuuCGGgAGUgCGUUgUGUg -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 140255 | 0.66 | 0.963561 |
Target: 5'- aUCCAGaaccuGGCCCUCAU-CAACGcCGCg -3' miRNA: 3'- gAGGUCcu---UCGGGAGUGcGUUGU-GUG- -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 141543 | 0.66 | 0.966775 |
Target: 5'- cCUCCgAGGAcgcGCUCUUcgGCGUcGCGCGCa -3' miRNA: 3'- -GAGG-UCCUu--CGGGAG--UGCGuUGUGUG- -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 146102 | 0.72 | 0.731472 |
Target: 5'- --aCAGGAAGCUccgccgcggcuucguCUCACGCGACAuCACc -3' miRNA: 3'- gagGUCCUUCGG---------------GAGUGCGUUGU-GUG- -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 147495 | 0.67 | 0.939697 |
Target: 5'- gUCCAGccccuggacGggGCCCUgCACGaCAACAUcuGCu -3' miRNA: 3'- gAGGUC---------CuuCGGGA-GUGC-GUUGUG--UG- -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 158060 | 0.66 | 0.963561 |
Target: 5'- cCUCCGGGcuGCCCggcucCACcgGCGGCGuCGCc -3' miRNA: 3'- -GAGGUCCuuCGGGa----GUG--CGUUGU-GUG- -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 158821 | 0.71 | 0.802178 |
Target: 5'- aCUUCAGGAGGCUCgUCuucaGCAGCuGCGCg -3' miRNA: 3'- -GAGGUCCUUCGGG-AGug--CGUUG-UGUG- -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 161210 | 0.66 | 0.966775 |
Target: 5'- aCUUCAGc-AGCucgaCCUCGCGCAGCGCccGCa -3' miRNA: 3'- -GAGGUCcuUCG----GGAGUGCGUUGUG--UG- -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 162463 | 0.7 | 0.819494 |
Target: 5'- gCUUCGGcGAAGgCCUCGCGCGGC-CGg -3' miRNA: 3'- -GAGGUC-CUUCgGGAGUGCGUUGuGUg -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 166979 | 0.67 | 0.94855 |
Target: 5'- gUCCGGGAucGUcgCCUCGCGCGcCGgACa -3' miRNA: 3'- gAGGUCCUu-CG--GGAGUGCGUuGUgUG- -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 168159 | 0.68 | 0.913502 |
Target: 5'- -gUCAGcAGGCCCUucCGCGCGGgGCGCg -3' miRNA: 3'- gaGGUCcUUCGGGA--GUGCGUUgUGUG- -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 169152 | 0.67 | 0.950211 |
Target: 5'- --gCGGGAauacgagggccugauGGCCUUCGCGguCAACACGCc -3' miRNA: 3'- gagGUCCU---------------UCGGGAGUGC--GUUGUGUG- -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 176637 | 0.69 | 0.881545 |
Target: 5'- gUCCGGGGA-CCCUCACucuuGCAuCugGCg -3' miRNA: 3'- gAGGUCCUUcGGGAGUG----CGUuGugUG- -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 189695 | 0.69 | 0.859748 |
Target: 5'- aUCCGGGGAuGuCCCUCcACGaCGACACcgGCa -3' miRNA: 3'- gAGGUCCUU-C-GGGAG-UGC-GUUGUG--UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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