miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15817 3' -55.1 NC_004065.1 + 230012 0.67 0.934924
Target:  5'- -cCCcGGggGCCCgCGCGCAcuCAgACg -3'
miRNA:   3'- gaGGuCCuuCGGGaGUGCGUu-GUgUG- -5'
15817 3' -55.1 NC_004065.1 + 229600 0.67 0.943795
Target:  5'- gCUCCAGGggGuucacccCCCggGCGCGGaaaaACACc -3'
miRNA:   3'- -GAGGUCCuuC-------GGGagUGCGUUg---UGUG- -5'
15817 3' -55.1 NC_004065.1 + 229557 0.67 0.944238
Target:  5'- -gCCcGGAGGCUgaCUCAgGCgAGCGCGCg -3'
miRNA:   3'- gaGGuCCUUCGG--GAGUgCG-UUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 229159 0.67 0.939697
Target:  5'- --gCGGGgcGCCCUCGCccgGCAGuCAUGCg -3'
miRNA:   3'- gagGUCCuuCGGGAGUG---CGUU-GUGUG- -5'
15817 3' -55.1 NC_004065.1 + 226436 0.66 0.952635
Target:  5'- uCUCCAGGAgAGUCCUCGC-CGAUcgAgACc -3'
miRNA:   3'- -GAGGUCCU-UCGGGAGUGcGUUG--UgUG- -5'
15817 3' -55.1 NC_004065.1 + 208493 0.68 0.919207
Target:  5'- -aCCAGGAuaacCCCcCACGUucGCACACg -3'
miRNA:   3'- gaGGUCCUuc--GGGaGUGCGu-UGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 207632 0.71 0.79329
Target:  5'- -aCCAGGGacAGCUC-CAUGCcGCACGCg -3'
miRNA:   3'- gaGGUCCU--UCGGGaGUGCGuUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 203512 0.66 0.966775
Target:  5'- -gCCGGcGggGUCCgUCGCGUGACAUg- -3'
miRNA:   3'- gaGGUC-CuuCGGG-AGUGCGUUGUGug -5'
15817 3' -55.1 NC_004065.1 + 202247 0.74 0.627602
Target:  5'- --gCAGGAGGCCCUCcagACGgCGGCGCAg -3'
miRNA:   3'- gagGUCCUUCGGGAG---UGC-GUUGUGUg -5'
15817 3' -55.1 NC_004065.1 + 201382 0.72 0.727583
Target:  5'- -gCCGGGggGUgC-CACGuCGACGCACa -3'
miRNA:   3'- gaGGUCCuuCGgGaGUGC-GUUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 198783 0.66 0.963561
Target:  5'- --aCGGGAucaGGgCCUCuuCGCAACACAg -3'
miRNA:   3'- gagGUCCU---UCgGGAGu-GCGUUGUGUg -5'
15817 3' -55.1 NC_004065.1 + 198503 0.68 0.919207
Target:  5'- -gCCGGGGuAGCCC-CGCgGCAcguCGCACg -3'
miRNA:   3'- gaGGUCCU-UCGGGaGUG-CGUu--GUGUG- -5'
15817 3' -55.1 NC_004065.1 + 196648 0.67 0.929919
Target:  5'- aUCCAGG-GGCCaguagCGCGCGGCGucucuCACg -3'
miRNA:   3'- gAGGUCCuUCGGga---GUGCGUUGU-----GUG- -5'
15817 3' -55.1 NC_004065.1 + 195437 0.7 0.810915
Target:  5'- -gCCAGGAAcGgCgUCGCGgAGCGCACg -3'
miRNA:   3'- gaGGUCCUU-CgGgAGUGCgUUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 195146 0.67 0.94855
Target:  5'- -aCUuGGAcaGGUCCacgcCGCGCAGCACGCg -3'
miRNA:   3'- gaGGuCCU--UCGGGa---GUGCGUUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 189695 0.69 0.859748
Target:  5'- aUCCGGGGAuGuCCCUCcACGaCGACACcgGCa -3'
miRNA:   3'- gAGGUCCUU-C-GGGAG-UGC-GUUGUG--UG- -5'
15817 3' -55.1 NC_004065.1 + 176637 0.69 0.881545
Target:  5'- gUCCGGGGA-CCCUCACucuuGCAuCugGCg -3'
miRNA:   3'- gAGGUCCUUcGGGAGUG----CGUuGugUG- -5'
15817 3' -55.1 NC_004065.1 + 169152 0.67 0.950211
Target:  5'- --gCGGGAauacgagggccugauGGCCUUCGCGguCAACACGCc -3'
miRNA:   3'- gagGUCCU---------------UCGGGAGUGC--GUUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 168159 0.68 0.913502
Target:  5'- -gUCAGcAGGCCCUucCGCGCGGgGCGCg -3'
miRNA:   3'- gaGGUCcUUCGGGA--GUGCGUUgUGUG- -5'
15817 3' -55.1 NC_004065.1 + 166979 0.67 0.94855
Target:  5'- gUCCGGGAucGUcgCCUCGCGCGcCGgACa -3'
miRNA:   3'- gAGGUCCUu-CG--GGAGUGCGUuGUgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.