miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15817 3' -55.1 NC_004065.1 + 162463 0.7 0.819494
Target:  5'- gCUUCGGcGAAGgCCUCGCGCGGC-CGg -3'
miRNA:   3'- -GAGGUC-CUUCgGGAGUGCGUUGuGUg -5'
15817 3' -55.1 NC_004065.1 + 161210 0.66 0.966775
Target:  5'- aCUUCAGc-AGCucgaCCUCGCGCAGCGCccGCa -3'
miRNA:   3'- -GAGGUCcuUCG----GGAGUGCGUUGUG--UG- -5'
15817 3' -55.1 NC_004065.1 + 158821 0.71 0.802178
Target:  5'- aCUUCAGGAGGCUCgUCuucaGCAGCuGCGCg -3'
miRNA:   3'- -GAGGUCCUUCGGG-AGug--CGUUG-UGUG- -5'
15817 3' -55.1 NC_004065.1 + 158060 0.66 0.963561
Target:  5'- cCUCCGGGcuGCCCggcucCACcgGCGGCGuCGCc -3'
miRNA:   3'- -GAGGUCCuuCGGGa----GUG--CGUUGU-GUG- -5'
15817 3' -55.1 NC_004065.1 + 147495 0.67 0.939697
Target:  5'- gUCCAGccccuggacGggGCCCUgCACGaCAACAUcuGCu -3'
miRNA:   3'- gAGGUC---------CuuCGGGA-GUGC-GUUGUG--UG- -5'
15817 3' -55.1 NC_004065.1 + 146102 0.72 0.731472
Target:  5'- --aCAGGAAGCUccgccgcggcuucguCUCACGCGACAuCACc -3'
miRNA:   3'- gagGUCCUUCGG---------------GAGUGCGUUGU-GUG- -5'
15817 3' -55.1 NC_004065.1 + 141543 0.66 0.966775
Target:  5'- cCUCCgAGGAcgcGCUCUUcgGCGUcGCGCGCa -3'
miRNA:   3'- -GAGG-UCCUu--CGGGAG--UGCGuUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 140255 0.66 0.963561
Target:  5'- aUCCAGaaccuGGCCCUCAU-CAACGcCGCg -3'
miRNA:   3'- gAGGUCcu---UCGGGAGUGcGUUGU-GUG- -5'
15817 3' -55.1 NC_004065.1 + 139479 0.67 0.944238
Target:  5'- uUCgAGGggGCCgUCGgGCGGgACGa -3'
miRNA:   3'- gAGgUCCuuCGGgAGUgCGUUgUGUg -5'
15817 3' -55.1 NC_004065.1 + 138711 0.66 0.956495
Target:  5'- aUCguGGAgcGGUCCUCAgGUucgugGACACGCc -3'
miRNA:   3'- gAGguCCU--UCGGGAGUgCG-----UUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 137935 0.72 0.737282
Target:  5'- -gCCGGGcucgGAGCUgCUgGCGCAACGCGCg -3'
miRNA:   3'- gaGGUCC----UUCGG-GAgUGCGUUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 136394 0.71 0.775096
Target:  5'- aCUCCAGG-AGCCCgucUACGUGAUGCGu -3'
miRNA:   3'- -GAGGUCCuUCGGGa--GUGCGUUGUGUg -5'
15817 3' -55.1 NC_004065.1 + 135475 0.66 0.956495
Target:  5'- -cCCAGGAGGUCaccggCUCGCGCAGguuCGCc -3'
miRNA:   3'- gaGGUCCUUCGG-----GAGUGCGUUgu-GUG- -5'
15817 3' -55.1 NC_004065.1 + 132985 0.73 0.698037
Target:  5'- -aCCAGGAgAGCUCgcaCGCGCAGCACcCa -3'
miRNA:   3'- gaGGUCCU-UCGGGa--GUGCGUUGUGuG- -5'
15817 3' -55.1 NC_004065.1 + 132823 0.66 0.966775
Target:  5'- -cCCAGGcuGGCCUaCagGCGCAGCGCGa -3'
miRNA:   3'- gaGGUCCu-UCGGGaG--UGCGUUGUGUg -5'
15817 3' -55.1 NC_004065.1 + 128410 0.67 0.94855
Target:  5'- -cCCGGGuccGCCCcguuuUCAuaUGCGACGCGCg -3'
miRNA:   3'- gaGGUCCuu-CGGG-----AGU--GCGUUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 127891 0.68 0.895003
Target:  5'- -gCCGGGucuGCCUccgCACGCAGCGCu- -3'
miRNA:   3'- gaGGUCCuu-CGGGa--GUGCGUUGUGug -5'
15817 3' -55.1 NC_004065.1 + 126364 0.7 0.819494
Target:  5'- gUCCAGGAuGCUCUC-CGUcACGCAg -3'
miRNA:   3'- gAGGUCCUuCGGGAGuGCGuUGUGUg -5'
15817 3' -55.1 NC_004065.1 + 126275 0.68 0.913502
Target:  5'- gUCC-GGAGGCCCcgcCGCGCGAaccgACGCc -3'
miRNA:   3'- gAGGuCCUUCGGGa--GUGCGUUg---UGUG- -5'
15817 3' -55.1 NC_004065.1 + 124718 0.7 0.827907
Target:  5'- gCUUCAGGuucAGGCCC--GCGCcGCACGCg -3'
miRNA:   3'- -GAGGUCC---UUCGGGagUGCGuUGUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.