Results 1 - 20 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15817 | 3' | -55.1 | NC_004065.1 | + | 63486 | 0.68 | 0.92468 |
Target: 5'- -gCCAGGc-GCCgUCGCGCAGC-CAg -3' miRNA: 3'- gaGGUCCuuCGGgAGUGCGUUGuGUg -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 124718 | 0.7 | 0.827907 |
Target: 5'- gCUUCAGGuucAGGCCC--GCGCcGCACGCg -3' miRNA: 3'- -GAGGUCC---UUCGGGagUGCGuUGUGUG- -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 32670 | 0.7 | 0.836146 |
Target: 5'- cCUCgCGGGcgcGGUUCUCGCGCAGCGCc- -3' miRNA: 3'- -GAG-GUCCu--UCGGGAGUGCGUUGUGug -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 45870 | 0.69 | 0.867222 |
Target: 5'- gCUCCgacggAGGAAGacCCCagACGCGACACGa -3' miRNA: 3'- -GAGG-----UCCUUC--GGGagUGCGUUGUGUg -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 35365 | 0.69 | 0.87449 |
Target: 5'- cCUCgucgaAGGAGcugccauugcacGCCCUgGCGCAGCGCAa -3' miRNA: 3'- -GAGg----UCCUU------------CGGGAgUGCGUUGUGUg -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 198503 | 0.68 | 0.919207 |
Target: 5'- -gCCGGGGuAGCCC-CGCgGCAcguCGCACg -3' miRNA: 3'- gaGGUCCU-UCGGGaGUG-CGUu--GUGUG- -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 51166 | 0.68 | 0.919207 |
Target: 5'- uCUCgAGGAAGCCCaugucCACGUuuugguggaggGugGCGCg -3' miRNA: 3'- -GAGgUCCUUCGGGa----GUGCG-----------UugUGUG- -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 208493 | 0.68 | 0.919207 |
Target: 5'- -aCCAGGAuaacCCCcCACGUucGCACACg -3' miRNA: 3'- gaGGUCCUuc--GGGaGUGCGu-UGUGUG- -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 46476 | 0.68 | 0.92468 |
Target: 5'- aCUCCAGGAa--CCUCGC-CGGCAuCACc -3' miRNA: 3'- -GAGGUCCUucgGGAGUGcGUUGU-GUG- -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 162463 | 0.7 | 0.819494 |
Target: 5'- gCUUCGGcGAAGgCCUCGCGCGGC-CGg -3' miRNA: 3'- -GAGGUC-CUUCgGGAGUGCGUUGuGUg -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 126364 | 0.7 | 0.819494 |
Target: 5'- gUCCAGGAuGCUCUC-CGUcACGCAg -3' miRNA: 3'- gAGGUCCUuCGGGAGuGCGuUGUGUg -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 43238 | 0.7 | 0.819494 |
Target: 5'- gUCCGGGGAGCUUUCAUcaaGCGccCGCGCa -3' miRNA: 3'- gAGGUCCUUCGGGAGUG---CGUu-GUGUG- -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 31519 | 0.76 | 0.50844 |
Target: 5'- --gUAGGAcGCCCUCACGCAGguCGCGCu -3' miRNA: 3'- gagGUCCUuCGGGAGUGCGUU--GUGUG- -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 47890 | 0.73 | 0.698037 |
Target: 5'- -gCCAcGAAGCCCUCGCGC-ACugAUu -3' miRNA: 3'- gaGGUcCUUCGGGAGUGCGuUGugUG- -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 80963 | 0.72 | 0.727583 |
Target: 5'- cCUCgGGGGAGCCCUCcACcaagaggguggaGUAGCACAg -3' miRNA: 3'- -GAGgUCCUUCGGGAG-UG------------CGUUGUGUg -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 201382 | 0.72 | 0.727583 |
Target: 5'- -gCCGGGggGUgC-CACGuCGACGCACa -3' miRNA: 3'- gaGGUCCuuCGgGaGUGC-GUUGUGUG- -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 146102 | 0.72 | 0.731472 |
Target: 5'- --aCAGGAAGCUccgccgcggcuucguCUCACGCGACAuCACc -3' miRNA: 3'- gagGUCCUUCGG---------------GAGUGCGUUGU-GUG- -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 136394 | 0.71 | 0.775096 |
Target: 5'- aCUCCAGG-AGCCCgucUACGUGAUGCGu -3' miRNA: 3'- -GAGGUCCuUCGGGa--GUGCGUUGUGUg -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 71973 | 0.71 | 0.79329 |
Target: 5'- -gCCGGGcAGCCCggAgGCGACGCAUg -3' miRNA: 3'- gaGGUCCuUCGGGagUgCGUUGUGUG- -5' |
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15817 | 3' | -55.1 | NC_004065.1 | + | 207632 | 0.71 | 0.79329 |
Target: 5'- -aCCAGGGacAGCUC-CAUGCcGCACGCg -3' miRNA: 3'- gaGGUCCU--UCGGGaGUGCGuUGUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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