miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15817 3' -55.1 NC_004065.1 + 106814 1.1 0.003922
Target:  5'- cCUCCAGGAAGCCCUCACGCAACACACg -3'
miRNA:   3'- -GAGGUCCUUCGGGAGUGCGUUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 119810 0.67 0.93829
Target:  5'- -gCCGGcGAAGCCCUCuucccucucgacggGCGgCGGCGCGu -3'
miRNA:   3'- gaGGUC-CUUCGGGAG--------------UGC-GUUGUGUg -5'
15817 3' -55.1 NC_004065.1 + 86907 0.67 0.944238
Target:  5'- -gCCGGucucGCCCUCG-GCGGCGCGCg -3'
miRNA:   3'- gaGGUCcuu-CGGGAGUgCGUUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 83039 0.66 0.969784
Target:  5'- aUCCAGGGGuaaCCCUCGucuuCGCAggcguccaugACGCGCu -3'
miRNA:   3'- gAGGUCCUUc--GGGAGU----GCGU----------UGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 90585 0.72 0.717803
Target:  5'- uCUCCAGGuccGCCCgCAUagcguccuugaGCAGCGCACu -3'
miRNA:   3'- -GAGGUCCuu-CGGGaGUG-----------CGUUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 137935 0.72 0.737282
Target:  5'- -gCCGGGcucgGAGCUgCUgGCGCAACGCGCg -3'
miRNA:   3'- gaGGUCC----UUCGG-GAgUGCGUUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 195437 0.7 0.810915
Target:  5'- -gCCAGGAAcGgCgUCGCGgAGCGCACg -3'
miRNA:   3'- gaGGUCCUU-CgGgAGUGCgUUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 189695 0.69 0.859748
Target:  5'- aUCCGGGGAuGuCCCUCcACGaCGACACcgGCa -3'
miRNA:   3'- gAGGUCCUU-C-GGGAG-UGC-GUUGUG--UG- -5'
15817 3' -55.1 NC_004065.1 + 117416 0.68 0.899503
Target:  5'- aUCCAGGAcuaccuGaCCUUCacgggcacguugcgACGCAGCACGCc -3'
miRNA:   3'- gAGGUCCUu-----C-GGGAG--------------UGCGUUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 230012 0.67 0.934924
Target:  5'- -cCCcGGggGCCCgCGCGCAcuCAgACg -3'
miRNA:   3'- gaGGuCCuuCGGGaGUGCGUu-GUgUG- -5'
15817 3' -55.1 NC_004065.1 + 126275 0.68 0.913502
Target:  5'- gUCC-GGAGGCCCcgcCGCGCGAaccgACGCc -3'
miRNA:   3'- gAGGuCCUUCGGGa--GUGCGUUg---UGUG- -5'
15817 3' -55.1 NC_004065.1 + 127891 0.68 0.895003
Target:  5'- -gCCGGGucuGCCUccgCACGCAGCGCu- -3'
miRNA:   3'- gaGGUCCuu-CGGGa--GUGCGUUGUGug -5'
15817 3' -55.1 NC_004065.1 + 202247 0.74 0.627602
Target:  5'- --gCAGGAGGCCCUCcagACGgCGGCGCAg -3'
miRNA:   3'- gagGUCCUUCGGGAG---UGC-GUUGUGUg -5'
15817 3' -55.1 NC_004065.1 + 28663 0.67 0.929919
Target:  5'- -cCCGGcGAGGCgcagCUCGCGCAGCAguuCGCg -3'
miRNA:   3'- gaGGUC-CUUCGg---GAGUGCGUUGU---GUG- -5'
15817 3' -55.1 NC_004065.1 + 87171 0.73 0.682066
Target:  5'- gUCCAGGAgccccugcaccgcgcGGUCgUCGCGCGAC-CGCa -3'
miRNA:   3'- gAGGUCCU---------------UCGGgAGUGCGUUGuGUG- -5'
15817 3' -55.1 NC_004065.1 + 176637 0.69 0.881545
Target:  5'- gUCCGGGGA-CCCUCACucuuGCAuCugGCg -3'
miRNA:   3'- gAGGUCCUUcGGGAGUG----CGUuGugUG- -5'
15817 3' -55.1 NC_004065.1 + 101113 0.67 0.929919
Target:  5'- -gCCGuaaacGGAGcccucGCCCUCGCGUcGCACGCc -3'
miRNA:   3'- gaGGU-----CCUU-----CGGGAGUGCGuUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 6888 0.67 0.9429
Target:  5'- -gCCGGGAugcucGCCCUCaucuACGCGGCggcuucagcugcggGCACg -3'
miRNA:   3'- gaGGUCCUu----CGGGAG----UGCGUUG--------------UGUG- -5'
15817 3' -55.1 NC_004065.1 + 132985 0.73 0.698037
Target:  5'- -aCCAGGAgAGCUCgcaCGCGCAGCACcCa -3'
miRNA:   3'- gaGGUCCU-UCGGGa--GUGCGUUGUGuG- -5'
15817 3' -55.1 NC_004065.1 + 158821 0.71 0.802178
Target:  5'- aCUUCAGGAGGCUCgUCuucaGCAGCuGCGCg -3'
miRNA:   3'- -GAGGUCCUUCGGG-AGug--CGUUG-UGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.