miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15817 3' -55.1 NC_004065.1 + 168159 0.68 0.913502
Target:  5'- -gUCAGcAGGCCCUucCGCGCGGgGCGCg -3'
miRNA:   3'- gaGGUCcUUCGGGA--GUGCGUUgUGUG- -5'
15817 3' -55.1 NC_004065.1 + 137935 0.72 0.737282
Target:  5'- -gCCGGGcucgGAGCUgCUgGCGCAACGCGCg -3'
miRNA:   3'- gaGGUCC----UUCGG-GAgUGCGUUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 35870 0.66 0.966775
Target:  5'- aUCCcgAGGAAGCCUUCGaaucccuguCGgGACAgACg -3'
miRNA:   3'- gAGG--UCCUUCGGGAGU---------GCgUUGUgUG- -5'
15817 3' -55.1 NC_004065.1 + 82541 0.66 0.959782
Target:  5'- gUCCAGGGgcuggacGGCCaC-CAUGCGGC-CGCa -3'
miRNA:   3'- gAGGUCCU-------UCGG-GaGUGCGUUGuGUG- -5'
15817 3' -55.1 NC_004065.1 + 86907 0.67 0.944238
Target:  5'- -gCCGGucucGCCCUCG-GCGGCGCGCg -3'
miRNA:   3'- gaGGUCcuu-CGGGAGUgCGUUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 90585 0.72 0.717803
Target:  5'- uCUCCAGGuccGCCCgCAUagcguccuugaGCAGCGCACu -3'
miRNA:   3'- -GAGGUCCuu-CGGGaGUG-----------CGUUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 94997 0.66 0.952635
Target:  5'- uCUCCgaaaaAGcGGAGCCCuUCGCGCAGaaguCugACg -3'
miRNA:   3'- -GAGG-----UC-CUUCGGG-AGUGCGUU----GugUG- -5'
15817 3' -55.1 NC_004065.1 + 132985 0.73 0.698037
Target:  5'- -aCCAGGAgAGCUCgcaCGCGCAGCACcCa -3'
miRNA:   3'- gaGGUCCU-UCGGGa--GUGCGUUGUGuG- -5'
15817 3' -55.1 NC_004065.1 + 87171 0.73 0.682066
Target:  5'- gUCCAGGAgccccugcaccgcgcGGUCgUCGCGCGAC-CGCa -3'
miRNA:   3'- gAGGUCCU---------------UCGGgAGUGCGUUGuGUG- -5'
15817 3' -55.1 NC_004065.1 + 139479 0.67 0.944238
Target:  5'- uUCgAGGggGCCgUCGgGCGGgACGa -3'
miRNA:   3'- gAGgUCCuuCGGgAGUgCGUUgUGUg -5'
15817 3' -55.1 NC_004065.1 + 203512 0.66 0.966775
Target:  5'- -gCCGGcGggGUCCgUCGCGUGACAUg- -3'
miRNA:   3'- gaGGUC-CuuCGGG-AGUGCGUUGUGug -5'
15817 3' -55.1 NC_004065.1 + 176637 0.69 0.881545
Target:  5'- gUCCGGGGA-CCCUCACucuuGCAuCugGCg -3'
miRNA:   3'- gAGGUCCUUcGGGAGUG----CGUuGugUG- -5'
15817 3' -55.1 NC_004065.1 + 158821 0.71 0.802178
Target:  5'- aCUUCAGGAGGCUCgUCuucaGCAGCuGCGCg -3'
miRNA:   3'- -GAGGUCCUUCGGG-AGug--CGUUG-UGUG- -5'
15817 3' -55.1 NC_004065.1 + 128410 0.67 0.94855
Target:  5'- -cCCGGGuccGCCCcguuuUCAuaUGCGACGCGCg -3'
miRNA:   3'- gaGGUCCuu-CGGG-----AGU--GCGUUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 158060 0.66 0.963561
Target:  5'- cCUCCGGGcuGCCCggcucCACcgGCGGCGuCGCc -3'
miRNA:   3'- -GAGGUCCuuCGGGa----GUG--CGUUGU-GUG- -5'
15817 3' -55.1 NC_004065.1 + 83039 0.66 0.969784
Target:  5'- aUCCAGGGGuaaCCCUCGucuuCGCAggcguccaugACGCGCu -3'
miRNA:   3'- gAGGUCCUUc--GGGAGU----GCGU----------UGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 45870 0.69 0.867222
Target:  5'- gCUCCgacggAGGAAGacCCCagACGCGACACGa -3'
miRNA:   3'- -GAGG-----UCCUUC--GGGagUGCGUUGUGUg -5'
15817 3' -55.1 NC_004065.1 + 226436 0.66 0.952635
Target:  5'- uCUCCAGGAgAGUCCUCGC-CGAUcgAgACc -3'
miRNA:   3'- -GAGGUCCU-UCGGGAGUGcGUUG--UgUG- -5'
15817 3' -55.1 NC_004065.1 + 195146 0.67 0.94855
Target:  5'- -aCUuGGAcaGGUCCacgcCGCGCAGCACGCg -3'
miRNA:   3'- gaGGuCCU--UCGGGa---GUGCGUUGUGUG- -5'
15817 3' -55.1 NC_004065.1 + 20697 0.66 0.952635
Target:  5'- -aCCGGGcAGUCCcCA-GUAGCACACg -3'
miRNA:   3'- gaGGUCCuUCGGGaGUgCGUUGUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.