miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15817 5' -58.4 NC_004065.1 + 136781 0.66 0.879326
Target:  5'- cGUGGGggaUGcgGGGGGGCCAGCUcGAg -3'
miRNA:   3'- -CGUCCgggACuaCCUCUCGGUCGA-CU- -5'
15817 5' -58.4 NC_004065.1 + 151089 0.66 0.865152
Target:  5'- cGCGGG-CCUGGUGGcgcccGAGCuCGGCg-- -3'
miRNA:   3'- -CGUCCgGGACUACCu----CUCG-GUCGacu -5'
15817 5' -58.4 NC_004065.1 + 192479 0.66 0.857767
Target:  5'- -gGGuGCCCcgacgaUGAUGGAGGGCUGuugcacGCUGAg -3'
miRNA:   3'- cgUC-CGGG------ACUACCUCUCGGU------CGACU- -5'
15817 5' -58.4 NC_004065.1 + 23620 0.66 0.857767
Target:  5'- gGCAGGCg--GGUGGAcGGgCGGCUGGc -3'
miRNA:   3'- -CGUCCGggaCUACCUcUCgGUCGACU- -5'
15817 5' -58.4 NC_004065.1 + 38082 0.66 0.857767
Target:  5'- aCAGGCCCgUGAggcUGGAGcuGUCGGCg-- -3'
miRNA:   3'- cGUCCGGG-ACU---ACCUCu-CGGUCGacu -5'
15817 5' -58.4 NC_004065.1 + 53040 0.67 0.842427
Target:  5'- aCAGcGCCCUGA-GGAGcGUC-GCUGGu -3'
miRNA:   3'- cGUC-CGGGACUaCCUCuCGGuCGACU- -5'
15817 5' -58.4 NC_004065.1 + 88717 0.67 0.809648
Target:  5'- gGCAGcGCCCUGAcGGucuuGGUCuGCUGGa -3'
miRNA:   3'- -CGUC-CGGGACUaCCuc--UCGGuCGACU- -5'
15817 5' -58.4 NC_004065.1 + 107745 0.67 0.801056
Target:  5'- uCAGGUCCUGcAUGGucacuGAGCUGGCcGGc -3'
miRNA:   3'- cGUCCGGGAC-UACCu----CUCGGUCGaCU- -5'
15817 5' -58.4 NC_004065.1 + 78042 0.67 0.801056
Target:  5'- cCGGGuCCCUGAU-GAG-GCCGGCgGGg -3'
miRNA:   3'- cGUCC-GGGACUAcCUCuCGGUCGaCU- -5'
15817 5' -58.4 NC_004065.1 + 136540 0.68 0.792321
Target:  5'- uGCuGGUCCUGGgguccGGGGAGCCgaGGCcGGu -3'
miRNA:   3'- -CGuCCGGGACUa----CCUCUCGG--UCGaCU- -5'
15817 5' -58.4 NC_004065.1 + 87091 0.68 0.78345
Target:  5'- aGCuGGCCCUGGUGccggaacucGAcGGCCGGCg-- -3'
miRNA:   3'- -CGuCCGGGACUAC---------CUcUCGGUCGacu -5'
15817 5' -58.4 NC_004065.1 + 128378 0.68 0.774451
Target:  5'- -gGGGCUUcgGcgGcGAGAGCCGGCUGu -3'
miRNA:   3'- cgUCCGGGa-CuaC-CUCUCGGUCGACu -5'
15817 5' -58.4 NC_004065.1 + 95333 0.68 0.773544
Target:  5'- uGCAGGCCCUcgaacucccGGUaGGAGAGCgcauccuCAGCg-- -3'
miRNA:   3'- -CGUCCGGGA---------CUA-CCUCUCG-------GUCGacu -5'
15817 5' -58.4 NC_004065.1 + 209552 0.68 0.756103
Target:  5'- cGCGGGa-CUGAaGGAGgcccGGCCGGCUGc -3'
miRNA:   3'- -CGUCCggGACUaCCUC----UCGGUCGACu -5'
15817 5' -58.4 NC_004065.1 + 94696 0.69 0.74677
Target:  5'- cGCGGcCCCUGAccuUGGAGGG-CGGCUcGAg -3'
miRNA:   3'- -CGUCcGGGACU---ACCUCUCgGUCGA-CU- -5'
15817 5' -58.4 NC_004065.1 + 87379 0.69 0.737344
Target:  5'- aGCAGGCCCUGcaucc--GCCGGUUGAu -3'
miRNA:   3'- -CGUCCGGGACuaccucuCGGUCGACU- -5'
15817 5' -58.4 NC_004065.1 + 80132 0.69 0.698859
Target:  5'- uGCAGGucguCCCUGGcgcGGcAGAGgCGGCUGAc -3'
miRNA:   3'- -CGUCC----GGGACUa--CC-UCUCgGUCGACU- -5'
15817 5' -58.4 NC_004065.1 + 136260 0.7 0.689085
Target:  5'- aGCGGGgCgCUGGucUGGGGAGCCAaGCgGGg -3'
miRNA:   3'- -CGUCCgG-GACU--ACCUCUCGGU-CGaCU- -5'
15817 5' -58.4 NC_004065.1 + 128698 0.7 0.663486
Target:  5'- cGCcuGGCUCUGGUucggcuccgcuucagGGAGAGgCGGCUGGc -3'
miRNA:   3'- -CGu-CCGGGACUA---------------CCUCUCgGUCGACU- -5'
15817 5' -58.4 NC_004065.1 + 164194 0.7 0.65953
Target:  5'- cGCGGGCCCUcAUGGAucucgccuuuacGAGCC-GCaUGAc -3'
miRNA:   3'- -CGUCCGGGAcUACCU------------CUCGGuCG-ACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.