Results 21 - 25 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15817 | 5' | -58.4 | NC_004065.1 | + | 107745 | 0.67 | 0.801056 |
Target: 5'- uCAGGUCCUGcAUGGucacuGAGCUGGCcGGc -3' miRNA: 3'- cGUCCGGGAC-UACCu----CUCGGUCGaCU- -5' |
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15817 | 5' | -58.4 | NC_004065.1 | + | 38082 | 0.66 | 0.857767 |
Target: 5'- aCAGGCCCgUGAggcUGGAGcuGUCGGCg-- -3' miRNA: 3'- cGUCCGGG-ACU---ACCUCu-CGGUCGacu -5' |
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15817 | 5' | -58.4 | NC_004065.1 | + | 23620 | 0.66 | 0.857767 |
Target: 5'- gGCAGGCg--GGUGGAcGGgCGGCUGGc -3' miRNA: 3'- -CGUCCGggaCUACCUcUCgGUCGACU- -5' |
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15817 | 5' | -58.4 | NC_004065.1 | + | 151089 | 0.66 | 0.865152 |
Target: 5'- cGCGGG-CCUGGUGGcgcccGAGCuCGGCg-- -3' miRNA: 3'- -CGUCCgGGACUACCu----CUCG-GUCGacu -5' |
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15817 | 5' | -58.4 | NC_004065.1 | + | 71993 | 0.76 | 0.34241 |
Target: 5'- cGCAuGCCCUGGaGGuGAGCCuGCUGGa -3' miRNA: 3'- -CGUcCGGGACUaCCuCUCGGuCGACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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