Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1582 | 3' | -48.6 | NC_001347.2 | + | 199424 | 0.67 | 0.999779 |
Target: 5'- uGG-GCUCGaagCCCAGAUu-GUCGGCCa -3' miRNA: 3'- -CCaCGAGCag-GGGUUUAucUAGUUGG- -5' |
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1582 | 3' | -48.6 | NC_001347.2 | + | 192169 | 0.66 | 0.999919 |
Target: 5'- cGGUuuccGC-CGUCUCCGGAU-GAgCGGCCg -3' miRNA: 3'- -CCA----CGaGCAGGGGUUUAuCUaGUUGG- -5' |
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1582 | 3' | -48.6 | NC_001347.2 | + | 183909 | 1.15 | 0.010653 |
Target: 5'- cGGUGCUCGUCCCCAAAUAGAUCAACCc -3' miRNA: 3'- -CCACGAGCAGGGGUUUAUCUAGUUGG- -5' |
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1582 | 3' | -48.6 | NC_001347.2 | + | 165592 | 0.66 | 0.999919 |
Target: 5'- cGGcgcgGCacuUCGUCgCCCAGucuGUAGAccggCAGCCg -3' miRNA: 3'- -CCa---CG---AGCAG-GGGUU---UAUCUa---GUUGG- -5' |
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1582 | 3' | -48.6 | NC_001347.2 | + | 158393 | 0.68 | 0.999457 |
Target: 5'- --aGCUCGUCUCCGAGacgcucuuUGGA-CAGCg -3' miRNA: 3'- ccaCGAGCAGGGGUUU--------AUCUaGUUGg -5' |
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1582 | 3' | -48.6 | NC_001347.2 | + | 154309 | 0.66 | 0.999895 |
Target: 5'- cGGUGC-CGgCCCaCAuAUAGAaaagCAGCUg -3' miRNA: 3'- -CCACGaGCaGGG-GUuUAUCUa---GUUGG- -5' |
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1582 | 3' | -48.6 | NC_001347.2 | + | 150674 | 0.68 | 0.999502 |
Target: 5'- cGGUGUUUGagCCCgAGGUGGGUUAuacaacgaccccgugGCCg -3' miRNA: 3'- -CCACGAGCa-GGGgUUUAUCUAGU---------------UGG- -5' |
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1582 | 3' | -48.6 | NC_001347.2 | + | 144296 | 0.67 | 0.999562 |
Target: 5'- -uUGC-CGcCCCCAAcaGGAUCAucgACCu -3' miRNA: 3'- ccACGaGCaGGGGUUuaUCUAGU---UGG- -5' |
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1582 | 3' | -48.6 | NC_001347.2 | + | 136307 | 0.66 | 0.999953 |
Target: 5'- cGGgGCUCGcgcUCCCUAGGUG---CGGCCg -3' miRNA: 3'- -CCaCGAGC---AGGGGUUUAUcuaGUUGG- -5' |
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1582 | 3' | -48.6 | NC_001347.2 | + | 124025 | 0.67 | 0.999779 |
Target: 5'- aGGcUGCaaGUCCCgCAGuUGGAugucgUCAACCu -3' miRNA: 3'- -CC-ACGagCAGGG-GUUuAUCU-----AGUUGG- -5' |
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1582 | 3' | -48.6 | NC_001347.2 | + | 94352 | 0.79 | 0.808716 |
Target: 5'- cGGUGCgUCGUCCUCAucuccGccuggagcgcggcccGUGGAUCGGCCa -3' miRNA: 3'- -CCACG-AGCAGGGGU-----U---------------UAUCUAGUUGG- -5' |
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1582 | 3' | -48.6 | NC_001347.2 | + | 85270 | 0.69 | 0.998538 |
Target: 5'- cGUGUuuUCGUCCUCGAAaGGuAUCGGCg -3' miRNA: 3'- cCACG--AGCAGGGGUUUaUC-UAGUUGg -5' |
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1582 | 3' | -48.6 | NC_001347.2 | + | 81251 | 0.67 | 0.999562 |
Target: 5'- cGUGCUCGgagauguagCCCagCAGAcucUGGAUCuGCCa -3' miRNA: 3'- cCACGAGCa--------GGG--GUUU---AUCUAGuUGG- -5' |
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1582 | 3' | -48.6 | NC_001347.2 | + | 75970 | 0.66 | 0.999865 |
Target: 5'- gGGcUGCggcgaGUCgCCCAGc-GGGUCGGCCa -3' miRNA: 3'- -CC-ACGag---CAG-GGGUUuaUCUAGUUGG- -5' |
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1582 | 3' | -48.6 | NC_001347.2 | + | 54298 | 0.75 | 0.943719 |
Target: 5'- --gGCagCGUUCCCuaucGAUGGAUCAACCu -3' miRNA: 3'- ccaCGa-GCAGGGGu---UUAUCUAGUUGG- -5' |
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1582 | 3' | -48.6 | NC_001347.2 | + | 37951 | 0.66 | 0.999919 |
Target: 5'- aGGUGCagcgCGUCCC-----AGcgCGGCCg -3' miRNA: 3'- -CCACGa---GCAGGGguuuaUCuaGUUGG- -5' |
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1582 | 3' | -48.6 | NC_001347.2 | + | 35993 | 0.67 | 0.999553 |
Target: 5'- uGGcUGCguugCGUCCCCGAacugcgaGUGGAUUAcACg -3' miRNA: 3'- -CC-ACGa---GCAGGGGUU-------UAUCUAGU-UGg -5' |
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1582 | 3' | -48.6 | NC_001347.2 | + | 31295 | 0.69 | 0.997908 |
Target: 5'- aGGUGgauaCGUCCCUggGUccgAGGUCGGCa -3' miRNA: 3'- -CCACga--GCAGGGGuuUA---UCUAGUUGg -5' |
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1582 | 3' | -48.6 | NC_001347.2 | + | 15135 | 0.68 | 0.999 |
Target: 5'- cGGUGCcgUGUacgccaUCCAGAUGGA-CGACCc -3' miRNA: 3'- -CCACGa-GCAg-----GGGUUUAUCUaGUUGG- -5' |
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1582 | 3' | -48.6 | NC_001347.2 | + | 7930 | 0.67 | 0.999649 |
Target: 5'- cGGUaGCUCcuucuuuUCCCCAGGUGGugCGACUg -3' miRNA: 3'- -CCA-CGAGc------AGGGGUUUAUCuaGUUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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