miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15820 3' -57.1 NC_004065.1 + 156751 0.66 0.931665
Target:  5'- -gGCUCG-GAACGgGUGGAU-CUGGAa -3'
miRNA:   3'- caCGGGCuCUUGCgCGUCUAcGACCU- -5'
15820 3' -57.1 NC_004065.1 + 30998 0.66 0.931665
Target:  5'- uGUGCgCCGGGGugGCG-AGAUGgaGaGGc -3'
miRNA:   3'- -CACG-GGCUCUugCGCgUCUACgaC-CU- -5'
15820 3' -57.1 NC_004065.1 + 149906 0.66 0.931665
Target:  5'- gGUGCCgGuuggaugaGGGGCGCGCGGcucgGCaGGAg -3'
miRNA:   3'- -CACGGgC--------UCUUGCGCGUCua--CGaCCU- -5'
15820 3' -57.1 NC_004065.1 + 62019 0.66 0.926581
Target:  5'- -gGCCCGAG-ACGCGUcgacGGA-GCUGu- -3'
miRNA:   3'- caCGGGCUCuUGCGCG----UCUaCGACcu -5'
15820 3' -57.1 NC_004065.1 + 4364 0.66 0.926581
Target:  5'- cUGCgCGuGGAGCGCGaCGGcgGCggcgGGAg -3'
miRNA:   3'- cACGgGC-UCUUGCGC-GUCuaCGa---CCU- -5'
15820 3' -57.1 NC_004065.1 + 109838 0.66 0.926581
Target:  5'- cUGCUgcggCGGGGGgccauCGCGCAGGUGCcGGGc -3'
miRNA:   3'- cACGG----GCUCUU-----GCGCGUCUACGaCCU- -5'
15820 3' -57.1 NC_004065.1 + 103457 0.66 0.920726
Target:  5'- -gGaCCCGAGcuGauguucacgaucuGCGCGCGGAUgucGCUGGGa -3'
miRNA:   3'- caC-GGGCUC--U-------------UGCGCGUCUA---CGACCU- -5'
15820 3' -57.1 NC_004065.1 + 121824 0.66 0.915732
Target:  5'- cUGCggaCgGAGGugGCGgGGAUGuCUGGGg -3'
miRNA:   3'- cACG---GgCUCUugCGCgUCUAC-GACCU- -5'
15820 3' -57.1 NC_004065.1 + 136513 0.66 0.915732
Target:  5'- -gGUCCGGGAagccagGCGgGUccgGGGUGCUGGu -3'
miRNA:   3'- caCGGGCUCU------UGCgCG---UCUACGACCu -5'
15820 3' -57.1 NC_004065.1 + 107446 0.66 0.912302
Target:  5'- cGUGCCCauggcgcuggcgaccGAGAucaaccaGCGCAugauGAUGCUGGc -3'
miRNA:   3'- -CACGGG---------------CUCUug-----CGCGU----CUACGACCu -5'
15820 3' -57.1 NC_004065.1 + 28838 0.66 0.909969
Target:  5'- -cGCCCGAGccggGACGCGCcgcuuGGUGUcGGc -3'
miRNA:   3'- caCGGGCUC----UUGCGCGu----CUACGaCCu -5'
15820 3' -57.1 NC_004065.1 + 79338 0.66 0.909969
Target:  5'- cGUGCgcgcggaggaCGAGGGCgGCGCGGc-GCUGGAa -3'
miRNA:   3'- -CACGg---------GCUCUUG-CGCGUCuaCGACCU- -5'
15820 3' -57.1 NC_004065.1 + 120071 0.66 0.909969
Target:  5'- uGUGCCUGc-AACGCcaGGAUGUUGGAg -3'
miRNA:   3'- -CACGGGCucUUGCGcgUCUACGACCU- -5'
15820 3' -57.1 NC_004065.1 + 69111 0.67 0.897772
Target:  5'- gGUGgaCGAGcagGACGCGCggcgcgccgacaAGGUGCUGGGg -3'
miRNA:   3'- -CACggGCUC---UUGCGCG------------UCUACGACCU- -5'
15820 3' -57.1 NC_004065.1 + 176548 0.67 0.893941
Target:  5'- -cGCCCGAGAACGgaggcUGguGAgccaucauucccacGCUGGGa -3'
miRNA:   3'- caCGGGCUCUUGC-----GCguCUa-------------CGACCU- -5'
15820 3' -57.1 NC_004065.1 + 141325 0.67 0.893941
Target:  5'- -cGCCgCGAGAacgucauguacgACGCggacgucguccgcucGCGGGUGCUGGc -3'
miRNA:   3'- caCGG-GCUCU------------UGCG---------------CGUCUACGACCu -5'
15820 3' -57.1 NC_004065.1 + 30085 0.67 0.891344
Target:  5'- cGUGgCgGAGcGCGCGCuGAUGUgucagGGAc -3'
miRNA:   3'- -CACgGgCUCuUGCGCGuCUACGa----CCU- -5'
15820 3' -57.1 NC_004065.1 + 148815 0.67 0.891344
Target:  5'- -aGUCCGAGucCGCGCGGuacUGCgcguuggGGAu -3'
miRNA:   3'- caCGGGCUCuuGCGCGUCu--ACGa------CCU- -5'
15820 3' -57.1 NC_004065.1 + 33796 0.67 0.884699
Target:  5'- -gGCCCGAcaugcggacgugGGACGaCGCGGAcaaGCUGGc -3'
miRNA:   3'- caCGGGCU------------CUUGC-GCGUCUa--CGACCu -5'
15820 3' -57.1 NC_004065.1 + 69409 0.67 0.884699
Target:  5'- cUGCCgaCGGGGcgccagguGCGCGCcGAccUGCUGGAc -3'
miRNA:   3'- cACGG--GCUCU--------UGCGCGuCU--ACGACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.