miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15820 5' -64.9 NC_004065.1 + 64285 0.66 0.652441
Target:  5'- -uUCCUGGAa--GGCGCGGC-GCGCGu -3'
miRNA:   3'- ccGGGACCUgggCCGCGUCGcCGUGC- -5'
15820 5' -64.9 NC_004065.1 + 75000 0.66 0.646831
Target:  5'- aGGCCCUGGuagcuggcguugucgACCagGGCGUcgaccuuggAGCGGCu-- -3'
miRNA:   3'- -CCGGGACC---------------UGGg-CCGCG---------UCGCCGugc -5'
15820 5' -64.9 NC_004065.1 + 163226 0.66 0.637473
Target:  5'- cGuCCCUcGGACgUccgcucauguuucguCGGCGCAGCGGCGgCGc -3'
miRNA:   3'- cC-GGGA-CCUG-G---------------GCCGCGUCGCCGU-GC- -5'
15820 5' -64.9 NC_004065.1 + 100130 0.66 0.633729
Target:  5'- aGGCCCcgaucaGGGUCCGcCGCAgcgcGCGGCACa -3'
miRNA:   3'- -CCGGGa-----CCUGGGCcGCGU----CGCCGUGc -5'
15820 5' -64.9 NC_004065.1 + 31092 0.66 0.633729
Target:  5'- cGGCCUUGGccGCCagGGUGgAGCgGGCAgGc -3'
miRNA:   3'- -CCGGGACC--UGGg-CCGCgUCG-CCGUgC- -5'
15820 5' -64.9 NC_004065.1 + 77531 0.66 0.628113
Target:  5'- cGGCUgCUGGACaaguaCCGGCGC-GCGaccgagggcucguucGCGCGg -3'
miRNA:   3'- -CCGG-GACCUG-----GGCCGCGuCGC---------------CGUGC- -5'
15820 5' -64.9 NC_004065.1 + 149726 0.66 0.628113
Target:  5'- cGGCCCUcGGACUcauagcgguccagcgCGucGCGCAGCucGCGCGu -3'
miRNA:   3'- -CCGGGA-CCUGG---------------GC--CGCGUCGc-CGUGC- -5'
15820 5' -64.9 NC_004065.1 + 74831 0.66 0.624369
Target:  5'- cGCCCgggucgGGACCgaggGGCGCAGguugaGGCGgCGg -3'
miRNA:   3'- cCGGGa-----CCUGGg---CCGCGUCg----CCGU-GC- -5'
15820 5' -64.9 NC_004065.1 + 74657 0.66 0.624369
Target:  5'- aGGUCC-GGACCgCGGCGCGuccGCcguaGCGCa -3'
miRNA:   3'- -CCGGGaCCUGG-GCCGCGU---CGc---CGUGc -5'
15820 5' -64.9 NC_004065.1 + 163627 0.66 0.624369
Target:  5'- aGCUCcGGAUCgagcggCGGCgGCGGCGGCAgCGg -3'
miRNA:   3'- cCGGGaCCUGG------GCCG-CGUCGCCGU-GC- -5'
15820 5' -64.9 NC_004065.1 + 105686 0.66 0.624369
Target:  5'- cGGUUCUacucGGACCCGG-GacuGGCGGCgACGg -3'
miRNA:   3'- -CCGGGA----CCUGGGCCgCg--UCGCCG-UGC- -5'
15820 5' -64.9 NC_004065.1 + 108791 0.66 0.624369
Target:  5'- cGGCgUcGaACCUGGCGUGGCGGC-CGu -3'
miRNA:   3'- -CCGgGaCcUGGGCCGCGUCGCCGuGC- -5'
15820 5' -64.9 NC_004065.1 + 85065 0.66 0.624369
Target:  5'- -uUCCUGGACCCcGUGCAGCucaucguGUACGu -3'
miRNA:   3'- ccGGGACCUGGGcCGCGUCGc------CGUGC- -5'
15820 5' -64.9 NC_004065.1 + 125902 0.66 0.615014
Target:  5'- cGCCgUGcuguaGGCCCGGcCGCu-CGGCACGu -3'
miRNA:   3'- cCGGgAC-----CUGGGCC-GCGucGCCGUGC- -5'
15820 5' -64.9 NC_004065.1 + 90679 0.66 0.615014
Target:  5'- uGGCCCccuugCCGGCGCuG-GGCACGa -3'
miRNA:   3'- -CCGGGaccugGGCCGCGuCgCCGUGC- -5'
15820 5' -64.9 NC_004065.1 + 115052 0.66 0.615014
Target:  5'- gGGCCgaGGGCaaCGGCGCGcgcgaggacGCGGCcuCGg -3'
miRNA:   3'- -CCGGgaCCUGg-GCCGCGU---------CGCCGu-GC- -5'
15820 5' -64.9 NC_004065.1 + 48089 0.66 0.615014
Target:  5'- -aCCCUcgcGGACCUguGGCgGCGGCGGUggcgGCGg -3'
miRNA:   3'- ccGGGA---CCUGGG--CCG-CGUCGCCG----UGC- -5'
15820 5' -64.9 NC_004065.1 + 196411 0.66 0.615014
Target:  5'- uGGCCUUGGccaugCCGGCccGCAGCaGCAUc -3'
miRNA:   3'- -CCGGGACCug---GGCCG--CGUCGcCGUGc -5'
15820 5' -64.9 NC_004065.1 + 65608 0.66 0.614079
Target:  5'- uGCCuguacaaCUGGAuCCCGGUaCGGCGGCGg- -3'
miRNA:   3'- cCGG-------GACCU-GGGCCGcGUCGCCGUgc -5'
15820 5' -64.9 NC_004065.1 + 37643 0.66 0.60567
Target:  5'- cGUCCUGGACaCGGcCGCAGagucuauGCGCGa -3'
miRNA:   3'- cCGGGACCUGgGCC-GCGUCgc-----CGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.