miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15821 3' -57.9 NC_004065.1 + 104210 1.03 0.005968
Target:  5'- cAACAAGGACAGGAUCCCCCAGCGCAUc -3'
miRNA:   3'- -UUGUUCCUGUCCUAGGGGGUCGCGUA- -5'
15821 3' -57.9 NC_004065.1 + 513 0.73 0.487649
Target:  5'- aGGCGGGGugAGGcgCCCCgcCAGCGUGUg -3'
miRNA:   3'- -UUGUUCCugUCCuaGGGG--GUCGCGUA- -5'
15821 3' -57.9 NC_004065.1 + 209122 0.72 0.545395
Target:  5'- cAACGAGGcgaaaGCGagcGGAUUCCCCAGCGCc- -3'
miRNA:   3'- -UUGUUCC-----UGU---CCUAGGGGGUCGCGua -5'
15821 3' -57.9 NC_004065.1 + 121617 0.72 0.564161
Target:  5'- cGguAGGGCAGGAUgCCCCCgaggauggcguugAGCGCGUc -3'
miRNA:   3'- uUguUCCUGUCCUA-GGGGG-------------UCGCGUA- -5'
15821 3' -57.9 NC_004065.1 + 120569 0.71 0.595117
Target:  5'- cGCGAgcGGGCGGGA-CCUCCGGCGCc- -3'
miRNA:   3'- uUGUU--CCUGUCCUaGGGGGUCGCGua -5'
15821 3' -57.9 NC_004065.1 + 126802 0.7 0.635402
Target:  5'- cGCGAGGugGGGAUCccggCCCCGGUGg-- -3'
miRNA:   3'- uUGUUCCugUCCUAG----GGGGUCGCgua -5'
15821 3' -57.9 NC_004065.1 + 160679 0.69 0.733826
Target:  5'- -cCGAGGGCAGGuugCCCUccgccagcugcuuCAGCGCGUu -3'
miRNA:   3'- uuGUUCCUGUCCua-GGGG-------------GUCGCGUA- -5'
15821 3' -57.9 NC_004065.1 + 211837 0.68 0.752962
Target:  5'- gGACAAGGcuaucgcACGGGAgUCCCggCCGGCGCu- -3'
miRNA:   3'- -UUGUUCC-------UGUCCU-AGGG--GGUCGCGua -5'
15821 3' -57.9 NC_004065.1 + 202240 0.68 0.753909
Target:  5'- uGCuGGGGCAGGAggCCCUCcagacggcGGCGCAg -3'
miRNA:   3'- uUGuUCCUGUCCUa-GGGGG--------UCGCGUa -5'
15821 3' -57.9 NC_004065.1 + 128579 0.68 0.753909
Target:  5'- uGACGAGGAgAacGGGUCCgCCGGCgGCGa -3'
miRNA:   3'- -UUGUUCCUgU--CCUAGGgGGUCG-CGUa -5'
15821 3' -57.9 NC_004065.1 + 194152 0.68 0.760505
Target:  5'- cGACAGGGAuucgaaggcuuccuCGGGAUCCCCCcgGGgGUg- -3'
miRNA:   3'- -UUGUUCCU--------------GUCCUAGGGGG--UCgCGua -5'
15821 3' -57.9 NC_004065.1 + 187416 0.68 0.763316
Target:  5'- -uCGAGGGCGaGcgCaCCCCAGCGCGc -3'
miRNA:   3'- uuGUUCCUGUcCuaG-GGGGUCGCGUa -5'
15821 3' -57.9 NC_004065.1 + 109658 0.68 0.772609
Target:  5'- cGACuccGGCAGGGUCCUCCgGGCGCu- -3'
miRNA:   3'- -UUGuucCUGUCCUAGGGGG-UCGCGua -5'
15821 3' -57.9 NC_004065.1 + 229590 0.68 0.772609
Target:  5'- cGCGAGGGCggcuccagGGGGUucaCCCCCcgGGCGCGg -3'
miRNA:   3'- uUGUUCCUG--------UCCUA---GGGGG--UCGCGUa -5'
15821 3' -57.9 NC_004065.1 + 122460 0.67 0.817079
Target:  5'- gGGCAGGGuCAGGGUggcgUCCCggUAGCGCAc -3'
miRNA:   3'- -UUGUUCCuGUCCUA----GGGG--GUCGCGUa -5'
15821 3' -57.9 NC_004065.1 + 62294 0.67 0.82468
Target:  5'- uGGCGAGGAgAaGAUCCCUCgucacagGGCGCAg -3'
miRNA:   3'- -UUGUUCCUgUcCUAGGGGG-------UCGCGUa -5'
15821 3' -57.9 NC_004065.1 + 106233 0.67 0.825516
Target:  5'- cAACGAGGACGuggacgccuGGGUCCgacaggcgaCCGGCGCGc -3'
miRNA:   3'- -UUGUUCCUGU---------CCUAGGg--------GGUCGCGUa -5'
15821 3' -57.9 NC_004065.1 + 35635 0.67 0.833782
Target:  5'- cGGCGGGGAugucaucggcgaCAGGGUCCCCCuGUuCAUc -3'
miRNA:   3'- -UUGUUCCU------------GUCCUAGGGGGuCGcGUA- -5'
15821 3' -57.9 NC_004065.1 + 116368 0.67 0.84187
Target:  5'- --aGAGGGCGGGGaa-CCCGGCGCu- -3'
miRNA:   3'- uugUUCCUGUCCUaggGGGUCGCGua -5'
15821 3' -57.9 NC_004065.1 + 224666 0.67 0.84187
Target:  5'- --aGGGGAUAGGGaccgUgCCaCCAGCGCAUc -3'
miRNA:   3'- uugUUCCUGUCCU----AgGG-GGUCGCGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.