Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15821 | 3' | -57.9 | NC_004065.1 | + | 513 | 0.73 | 0.487649 |
Target: 5'- aGGCGGGGugAGGcgCCCCgcCAGCGUGUg -3' miRNA: 3'- -UUGUUCCugUCCuaGGGG--GUCGCGUA- -5' |
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15821 | 3' | -57.9 | NC_004065.1 | + | 117169 | 0.66 | 0.879406 |
Target: 5'- cAGCGccGACGGGGUCCgCCCcuGGgGCAg -3' miRNA: 3'- -UUGUucCUGUCCUAGG-GGG--UCgCGUa -5' |
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15821 | 3' | -57.9 | NC_004065.1 | + | 29109 | 0.66 | 0.872306 |
Target: 5'- uGACGugGGGACacuuGGGAggccggUCgCCCAGCGCGa -3' miRNA: 3'- -UUGU--UCCUG----UCCU------AGgGGGUCGCGUa -5' |
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15821 | 3' | -57.9 | NC_004065.1 | + | 67207 | 0.66 | 0.872306 |
Target: 5'- --uGGGGACGGaGAUCCCCaCGGUGa-- -3' miRNA: 3'- uugUUCCUGUC-CUAGGGG-GUCGCgua -5' |
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15821 | 3' | -57.9 | NC_004065.1 | + | 66604 | 0.66 | 0.857484 |
Target: 5'- gGACGcGGACAGGAUCCggagccgcgggcUgCGGCGCu- -3' miRNA: 3'- -UUGUuCCUGUCCUAGG------------GgGUCGCGua -5' |
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15821 | 3' | -57.9 | NC_004065.1 | + | 224666 | 0.67 | 0.84187 |
Target: 5'- --aGGGGAUAGGGaccgUgCCaCCAGCGCAUc -3' miRNA: 3'- uugUUCCUGUCCU----AgGG-GGUCGCGUA- -5' |
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15821 | 3' | -57.9 | NC_004065.1 | + | 35635 | 0.67 | 0.833782 |
Target: 5'- cGGCGGGGAugucaucggcgaCAGGGUCCCCCuGUuCAUc -3' miRNA: 3'- -UUGUUCCU------------GUCCUAGGGGGuCGcGUA- -5' |
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15821 | 3' | -57.9 | NC_004065.1 | + | 62294 | 0.67 | 0.82468 |
Target: 5'- uGGCGAGGAgAaGAUCCCUCgucacagGGCGCAg -3' miRNA: 3'- -UUGUUCCUgUcCUAGGGGG-------UCGCGUa -5' |
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15821 | 3' | -57.9 | NC_004065.1 | + | 122460 | 0.67 | 0.817079 |
Target: 5'- gGGCAGGGuCAGGGUggcgUCCCggUAGCGCAc -3' miRNA: 3'- -UUGUUCCuGUCCUA----GGGG--GUCGCGUa -5' |
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15821 | 3' | -57.9 | NC_004065.1 | + | 120569 | 0.71 | 0.595117 |
Target: 5'- cGCGAgcGGGCGGGA-CCUCCGGCGCc- -3' miRNA: 3'- uUGUU--CCUGUCCUaGGGGGUCGCGua -5' |
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15821 | 3' | -57.9 | NC_004065.1 | + | 126802 | 0.7 | 0.635402 |
Target: 5'- cGCGAGGugGGGAUCccggCCCCGGUGg-- -3' miRNA: 3'- uUGUUCCugUCCUAG----GGGGUCGCgua -5' |
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15821 | 3' | -57.9 | NC_004065.1 | + | 211837 | 0.68 | 0.752962 |
Target: 5'- gGACAAGGcuaucgcACGGGAgUCCCggCCGGCGCu- -3' miRNA: 3'- -UUGUUCC-------UGUCCU-AGGG--GGUCGCGua -5' |
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15821 | 3' | -57.9 | NC_004065.1 | + | 194152 | 0.68 | 0.760505 |
Target: 5'- cGACAGGGAuucgaaggcuuccuCGGGAUCCCCCcgGGgGUg- -3' miRNA: 3'- -UUGUUCCU--------------GUCCUAGGGGG--UCgCGua -5' |
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15821 | 3' | -57.9 | NC_004065.1 | + | 109658 | 0.68 | 0.772609 |
Target: 5'- cGACuccGGCAGGGUCCUCCgGGCGCu- -3' miRNA: 3'- -UUGuucCUGUCCUAGGGGG-UCGCGua -5' |
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15821 | 3' | -57.9 | NC_004065.1 | + | 229590 | 0.68 | 0.772609 |
Target: 5'- cGCGAGGGCggcuccagGGGGUucaCCCCCcgGGCGCGg -3' miRNA: 3'- uUGUUCCUG--------UCCUA---GGGGG--UCGCGUa -5' |
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15821 | 3' | -57.9 | NC_004065.1 | + | 28880 | 0.66 | 0.857484 |
Target: 5'- uGACGAGGACugcuGGcgCCCCgAGUcgGCGg -3' miRNA: 3'- -UUGUUCCUGu---CCuaGGGGgUCG--CGUa -5' |
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15821 | 3' | -57.9 | NC_004065.1 | + | 209122 | 0.72 | 0.545395 |
Target: 5'- cAACGAGGcgaaaGCGagcGGAUUCCCCAGCGCc- -3' miRNA: 3'- -UUGUUCC-----UGU---CCUAGGGGGUCGCGua -5' |
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15821 | 3' | -57.9 | NC_004065.1 | + | 121617 | 0.72 | 0.564161 |
Target: 5'- cGguAGGGCAGGAUgCCCCCgaggauggcguugAGCGCGUc -3' miRNA: 3'- uUguUCCUGUCCUA-GGGGG-------------UCGCGUA- -5' |
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15821 | 3' | -57.9 | NC_004065.1 | + | 160679 | 0.69 | 0.733826 |
Target: 5'- -cCGAGGGCAGGuugCCCUccgccagcugcuuCAGCGCGUu -3' miRNA: 3'- uuGUUCCUGUCCua-GGGG-------------GUCGCGUA- -5' |
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15821 | 3' | -57.9 | NC_004065.1 | + | 202240 | 0.68 | 0.753909 |
Target: 5'- uGCuGGGGCAGGAggCCCUCcagacggcGGCGCAg -3' miRNA: 3'- uUGuUCCUGUCCUa-GGGGG--------UCGCGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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