miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15821 5' -55.7 NC_004065.1 + 94953 0.66 0.967442
Target:  5'- --uGGCGCUgCGGGGCccgCUCcgcgGCUGCCg -3'
miRNA:   3'- gcuCCGCGA-GUUCUGa--GAGa---CGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 87308 0.66 0.967442
Target:  5'- gCGAGGCGCcCAGGACcCcCga-CGCCg -3'
miRNA:   3'- -GCUCCGCGaGUUCUGaGaGacgGUGG- -5'
15821 5' -55.7 NC_004065.1 + 217585 0.66 0.967442
Target:  5'- aGAGGUa--CGAGAucgcCUCUCUGCCAUUc -3'
miRNA:   3'- gCUCCGcgaGUUCU----GAGAGACGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 170767 0.66 0.967442
Target:  5'- uCGAGGagaucCGCggugCAGGGuCUCUCUGCUcUCg -3'
miRNA:   3'- -GCUCC-----GCGa---GUUCU-GAGAGACGGuGG- -5'
15821 5' -55.7 NC_004065.1 + 118741 0.66 0.967138
Target:  5'- gGAGGUGUUgAAGAuggucuuCUCUCgGUCACg -3'
miRNA:   3'- gCUCCGCGAgUUCU-------GAGAGaCGGUGg -5'
15821 5' -55.7 NC_004065.1 + 193365 0.66 0.964319
Target:  5'- --cGGUGCagAGGACaaagUCUCUGCUucuGCCg -3'
miRNA:   3'- gcuCCGCGagUUCUG----AGAGACGG---UGG- -5'
15821 5' -55.7 NC_004065.1 + 186498 0.66 0.964319
Target:  5'- gCGGGaCGC-CGAucGACUCUUccugGCCGCCg -3'
miRNA:   3'- -GCUCcGCGaGUU--CUGAGAGa---CGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 210206 0.66 0.964319
Target:  5'- gGAGcGUGCUUGAGACcgugucccCUgUGCCACg -3'
miRNA:   3'- gCUC-CGCGAGUUCUGa-------GAgACGGUGg -5'
15821 5' -55.7 NC_004065.1 + 101258 0.66 0.964319
Target:  5'- gCGAcGGCGCccUCAAcGCUgCcgCUGCCGCUg -3'
miRNA:   3'- -GCU-CCGCG--AGUUcUGA-Ga-GACGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 161441 0.66 0.964319
Target:  5'- --cGGCGCUCuGGAUcg-CcGCCGCCg -3'
miRNA:   3'- gcuCCGCGAGuUCUGagaGaCGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 104330 0.66 0.964319
Target:  5'- gGGGGaugaucgGgUCAGGGCgCUCUGCCGgCg -3'
miRNA:   3'- gCUCCg------CgAGUUCUGaGAGACGGUgG- -5'
15821 5' -55.7 NC_004065.1 + 170457 0.66 0.960993
Target:  5'- gGAGGCGC-C----UUCgCUGCCGCCg -3'
miRNA:   3'- gCUCCGCGaGuucuGAGaGACGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 142652 0.66 0.960992
Target:  5'- --cGGCGgaugCAGGGCcugCUCUGCgACCa -3'
miRNA:   3'- gcuCCGCga--GUUCUGa--GAGACGgUGG- -5'
15821 5' -55.7 NC_004065.1 + 155583 0.66 0.960992
Target:  5'- cCGAGGacggcguGCUCGAGGCcaucCUCUGUgACa -3'
miRNA:   3'- -GCUCCg------CGAGUUCUGa---GAGACGgUGg -5'
15821 5' -55.7 NC_004065.1 + 207055 0.66 0.960992
Target:  5'- uCGGGGCGauCUCGGGGgUUUCcGCCucgauGCCg -3'
miRNA:   3'- -GCUCCGC--GAGUUCUgAGAGaCGG-----UGG- -5'
15821 5' -55.7 NC_004065.1 + 53260 0.66 0.960992
Target:  5'- uGGGGCGCg-AGGAgUCUCccgcGUCACUg -3'
miRNA:   3'- gCUCCGCGagUUCUgAGAGa---CGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 127636 0.66 0.960992
Target:  5'- aCGAGGCGCU-GAGugUuCUCgcgGuCCAUg -3'
miRNA:   3'- -GCUCCGCGAgUUCugA-GAGa--C-GGUGg -5'
15821 5' -55.7 NC_004065.1 + 148306 0.66 0.957457
Target:  5'- --cGGUGUUCAGcAC-CUCgGCCGCCa -3'
miRNA:   3'- gcuCCGCGAGUUcUGaGAGaCGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 101852 0.66 0.957457
Target:  5'- gGGGGCGUcgGGGGCgCUaucGCCGCCg -3'
miRNA:   3'- gCUCCGCGagUUCUGaGAga-CGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 129870 0.66 0.957457
Target:  5'- gGAGGUGUUC--GAC-CUgUGCCGCg -3'
miRNA:   3'- gCUCCGCGAGuuCUGaGAgACGGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.