miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15821 5' -55.7 NC_004065.1 + 88503 0.66 0.953709
Target:  5'- gGAGGUGCUCcuGAcCUUgagCUGuCCGCg -3'
miRNA:   3'- gCUCCGCGAGuuCU-GAGa--GAC-GGUGg -5'
15821 5' -55.7 NC_004065.1 + 148306 0.66 0.957457
Target:  5'- --cGGUGUUCAGcAC-CUCgGCCGCCa -3'
miRNA:   3'- gcuCCGCGAGUUcUGaGAGaCGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 170457 0.66 0.960993
Target:  5'- gGAGGCGC-C----UUCgCUGCCGCCg -3'
miRNA:   3'- gCUCCGCGaGuucuGAGaGACGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 117274 0.66 0.949744
Target:  5'- gGAGGCGCacgagccggcgaUCAGGACgaUCUGUCAg- -3'
miRNA:   3'- gCUCCGCG------------AGUUCUGagAGACGGUgg -5'
15821 5' -55.7 NC_004065.1 + 186498 0.66 0.964319
Target:  5'- gCGGGaCGC-CGAucGACUCUUccugGCCGCCg -3'
miRNA:   3'- -GCUCcGCGaGUU--CUGAGAGa---CGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 210206 0.66 0.964319
Target:  5'- gGAGcGUGCUUGAGACcgugucccCUgUGCCACg -3'
miRNA:   3'- gCUC-CGCGAGUUCUGa-------GAgACGGUGg -5'
15821 5' -55.7 NC_004065.1 + 193365 0.66 0.964319
Target:  5'- --cGGUGCagAGGACaaagUCUCUGCUucuGCCg -3'
miRNA:   3'- gcuCCGCGagUUCUG----AGAGACGG---UGG- -5'
15821 5' -55.7 NC_004065.1 + 217585 0.66 0.967442
Target:  5'- aGAGGUa--CGAGAucgcCUCUCUGCCAUUc -3'
miRNA:   3'- gCUCCGcgaGUUCU----GAGAGACGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 229451 0.66 0.953709
Target:  5'- uCGAGGaaCGCUCGcuucacGGCUCUCcggGCCgggcGCCg -3'
miRNA:   3'- -GCUCC--GCGAGUu-----CUGAGAGa--CGG----UGG- -5'
15821 5' -55.7 NC_004065.1 + 101852 0.66 0.957457
Target:  5'- gGGGGCGUcgGGGGCgCUaucGCCGCCg -3'
miRNA:   3'- gCUCCGCGagUUCUGaGAga-CGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 51043 0.66 0.957457
Target:  5'- aCGGGGUGCUCuGGAUggaCUGCgaACCc -3'
miRNA:   3'- -GCUCCGCGAGuUCUGagaGACGg-UGG- -5'
15821 5' -55.7 NC_004065.1 + 115073 0.66 0.953323
Target:  5'- gCGAGGaCGCggccUCGGucGGCUCUUcugaccagaaaugUGCCGCCc -3'
miRNA:   3'- -GCUCC-GCG----AGUU--CUGAGAG-------------ACGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 105036 0.66 0.957457
Target:  5'- uGAGcGCGCUgCAcGACccgcgcCUCUGgCCGCCc -3'
miRNA:   3'- gCUC-CGCGA-GUuCUGa-----GAGAC-GGUGG- -5'
15821 5' -55.7 NC_004065.1 + 158722 0.66 0.957457
Target:  5'- gCGAGGagaUCGAGA-UCUUgGCCGCCg -3'
miRNA:   3'- -GCUCCgcgAGUUCUgAGAGaCGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 210551 0.66 0.953709
Target:  5'- aCGAugGGCGCUCcaccGACUCcCgucCCACCa -3'
miRNA:   3'- -GCU--CCGCGAGuu--CUGAGaGac-GGUGG- -5'
15821 5' -55.7 NC_004065.1 + 94953 0.66 0.967442
Target:  5'- --uGGCGCUgCGGGGCccgCUCcgcgGCUGCCg -3'
miRNA:   3'- gcuCCGCGA-GUUCUGa--GAGa---CGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 155851 0.66 0.953709
Target:  5'- -aGGGCGgUCAucGGCUCgaacGCCGCCu -3'
miRNA:   3'- gcUCCGCgAGUu-CUGAGaga-CGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 92047 0.66 0.954094
Target:  5'- uGGcGCGCUCGAGGCaUCUCacgcgcgcucggaggGCCGCg -3'
miRNA:   3'- gCUcCGCGAGUUCUG-AGAGa--------------CGGUGg -5'
15821 5' -55.7 NC_004065.1 + 149207 0.66 0.949745
Target:  5'- --cGGCGCugcugcugUCGcuGCUCccgCUGCCGCCg -3'
miRNA:   3'- gcuCCGCG--------AGUucUGAGa--GACGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 27758 0.66 0.949745
Target:  5'- cCGccGCGCaUCGAGACgCUgcGCCGCCg -3'
miRNA:   3'- -GCucCGCG-AGUUCUGaGAgaCGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.