miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15821 5' -55.7 NC_004065.1 + 88503 0.66 0.953709
Target:  5'- gGAGGUGCUCcuGAcCUUgagCUGuCCGCg -3'
miRNA:   3'- gCUCCGCGAGuuCU-GAGa--GAC-GGUGg -5'
15821 5' -55.7 NC_004065.1 + 118741 0.66 0.967138
Target:  5'- gGAGGUGUUgAAGAuggucuuCUCUCgGUCACg -3'
miRNA:   3'- gCUCCGCGAgUUCU-------GAGAGaCGGUGg -5'
15821 5' -55.7 NC_004065.1 + 210551 0.66 0.953709
Target:  5'- aCGAugGGCGCUCcaccGACUCcCgucCCACCa -3'
miRNA:   3'- -GCU--CCGCGAGuu--CUGAGaGac-GGUGG- -5'
15821 5' -55.7 NC_004065.1 + 101258 0.66 0.964319
Target:  5'- gCGAcGGCGCccUCAAcGCUgCcgCUGCCGCUg -3'
miRNA:   3'- -GCU-CCGCG--AGUUcUGA-Ga-GACGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 182253 0.66 0.957457
Target:  5'- uCGAGGgGCUC----CUCgUCgGCCACCc -3'
miRNA:   3'- -GCUCCgCGAGuucuGAG-AGaCGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 207055 0.66 0.960992
Target:  5'- uCGGGGCGauCUCGGGGgUUUCcGCCucgauGCCg -3'
miRNA:   3'- -GCUCCGC--GAGUUCUgAGAGaCGG-----UGG- -5'
15821 5' -55.7 NC_004065.1 + 127636 0.66 0.960992
Target:  5'- aCGAGGCGCU-GAGugUuCUCgcgGuCCAUg -3'
miRNA:   3'- -GCUCCGCGAgUUCugA-GAGa--C-GGUGg -5'
15821 5' -55.7 NC_004065.1 + 104330 0.66 0.964319
Target:  5'- gGGGGaugaucgGgUCAGGGCgCUCUGCCGgCg -3'
miRNA:   3'- gCUCCg------CgAGUUCUGaGAGACGGUgG- -5'
15821 5' -55.7 NC_004065.1 + 138043 0.66 0.957457
Target:  5'- uCGGGGCGgUUcAGAUUCgugcacgUUGCCGCg -3'
miRNA:   3'- -GCUCCGCgAGuUCUGAGa------GACGGUGg -5'
15821 5' -55.7 NC_004065.1 + 94953 0.66 0.967442
Target:  5'- --uGGCGCUgCGGGGCccgCUCcgcgGCUGCCg -3'
miRNA:   3'- gcuCCGCGA-GUUCUGa--GAGa---CGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 155851 0.66 0.953709
Target:  5'- -aGGGCGgUCAucGGCUCgaacGCCGCCu -3'
miRNA:   3'- gcUCCGCgAGUu-CUGAGaga-CGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 117274 0.66 0.949744
Target:  5'- gGAGGCGCacgagccggcgaUCAGGACgaUCUGUCAg- -3'
miRNA:   3'- gCUCCGCG------------AGUUCUGagAGACGGUgg -5'
15821 5' -55.7 NC_004065.1 + 142652 0.66 0.960992
Target:  5'- --cGGCGgaugCAGGGCcugCUCUGCgACCa -3'
miRNA:   3'- gcuCCGCga--GUUCUGa--GAGACGgUGG- -5'
15821 5' -55.7 NC_004065.1 + 155583 0.66 0.960992
Target:  5'- cCGAGGacggcguGCUCGAGGCcaucCUCUGUgACa -3'
miRNA:   3'- -GCUCCg------CGAGUUCUGa---GAGACGgUGg -5'
15821 5' -55.7 NC_004065.1 + 85714 0.67 0.94556
Target:  5'- aCGAGGCGCUgAAcGC-CUCgaGCUACg -3'
miRNA:   3'- -GCUCCGCGAgUUcUGaGAGa-CGGUGg -5'
15821 5' -55.7 NC_004065.1 + 130335 0.67 0.936522
Target:  5'- -cGGGaGCUCuc-GCUCUUUGUCACCg -3'
miRNA:   3'- gcUCCgCGAGuucUGAGAGACGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 199983 0.67 0.941153
Target:  5'- uCGA-GCGC-CGAGAa-CUCcGCCACCa -3'
miRNA:   3'- -GCUcCGCGaGUUCUgaGAGaCGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 146716 0.67 0.94556
Target:  5'- aCGccGCGCUCGAcGACgagagCUCcGUCGCCc -3'
miRNA:   3'- -GCucCGCGAGUU-CUGa----GAGaCGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 154343 0.67 0.94556
Target:  5'- gGGGGCGCggcCAAGAaUCagcccgCgGCCGCCu -3'
miRNA:   3'- gCUCCGCGa--GUUCUgAGa-----GaCGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 133092 0.67 0.931665
Target:  5'- aGAGGCGCagCGcGAgUCUaacgGUCACCa -3'
miRNA:   3'- gCUCCGCGa-GUuCUgAGAga--CGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.