Results 1 - 20 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15821 | 5' | -55.7 | NC_004065.1 | + | 104245 | 1.11 | 0.003497 |
Target: 5'- cCGAGGCGCUCAAGACUCUCUGCCACCc -3' miRNA: 3'- -GCUCCGCGAGUUCUGAGAGACGGUGG- -5' |
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15821 | 5' | -55.7 | NC_004065.1 | + | 130585 | 0.78 | 0.410002 |
Target: 5'- gCGAGGCGCgcgaugUCGAGGCggCgUCUGCCGCUc -3' miRNA: 3'- -GCUCCGCG------AGUUCUGa-G-AGACGGUGG- -5' |
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15821 | 5' | -55.7 | NC_004065.1 | + | 86349 | 0.78 | 0.418495 |
Target: 5'- aGAGGUGUUCGucguagccgAGGCUCUCgGCCACg -3' miRNA: 3'- gCUCCGCGAGU---------UCUGAGAGaCGGUGg -5' |
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15821 | 5' | -55.7 | NC_004065.1 | + | 115208 | 0.74 | 0.636246 |
Target: 5'- --cGGCGCUCc---CUCUCUGCCGCg -3' miRNA: 3'- gcuCCGCGAGuucuGAGAGACGGUGg -5' |
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15821 | 5' | -55.7 | NC_004065.1 | + | 200338 | 0.73 | 0.666113 |
Target: 5'- uCGGGGCGC-CGAGGCUCagcaacCUGCCGg- -3' miRNA: 3'- -GCUCCGCGaGUUCUGAGa-----GACGGUgg -5' |
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15821 | 5' | -55.7 | NC_004065.1 | + | 198693 | 0.73 | 0.666113 |
Target: 5'- aCGGGGUGUUUAAGGCggcccuggCUCUGUC-CCa -3' miRNA: 3'- -GCUCCGCGAGUUCUGa-------GAGACGGuGG- -5' |
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15821 | 5' | -55.7 | NC_004065.1 | + | 106283 | 0.73 | 0.676027 |
Target: 5'- cCGAGGUGCU--GGACUCggagGCCAUCu -3' miRNA: 3'- -GCUCCGCGAguUCUGAGaga-CGGUGG- -5' |
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15821 | 5' | -55.7 | NC_004065.1 | + | 134791 | 0.73 | 0.685906 |
Target: 5'- gCGAGuucGUGCUCAAGAgUCUCUuCCACg -3' miRNA: 3'- -GCUC---CGCGAGUUCUgAGAGAcGGUGg -5' |
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15821 | 5' | -55.7 | NC_004065.1 | + | 32882 | 0.73 | 0.695744 |
Target: 5'- aGAGGCGCgccggCGAG-Cg-UCUGCCGCUg -3' miRNA: 3'- gCUCCGCGa----GUUCuGagAGACGGUGG- -5' |
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15821 | 5' | -55.7 | NC_004065.1 | + | 75061 | 0.72 | 0.715258 |
Target: 5'- aGAcGUGCUCGAGGCggcugCUCaUGCCGCUc -3' miRNA: 3'- gCUcCGCGAGUUCUGa----GAG-ACGGUGG- -5' |
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15821 | 5' | -55.7 | NC_004065.1 | + | 57544 | 0.72 | 0.724919 |
Target: 5'- gCGAGGUGCcCGAG-CUCUCUGagauaCACUu -3' miRNA: 3'- -GCUCCGCGaGUUCuGAGAGACg----GUGG- -5' |
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15821 | 5' | -55.7 | NC_004065.1 | + | 205479 | 0.71 | 0.766409 |
Target: 5'- aCGAGGgGCUCGu--CUCcgcugccgucgucgCUGCCGCCg -3' miRNA: 3'- -GCUCCgCGAGUucuGAGa-------------GACGGUGG- -5' |
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15821 | 5' | -55.7 | NC_004065.1 | + | 229487 | 0.71 | 0.771914 |
Target: 5'- gGGGGCGCUCGcacaggGGGCg--C-GCCACCg -3' miRNA: 3'- gCUCCGCGAGU------UCUGagaGaCGGUGG- -5' |
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15821 | 5' | -55.7 | NC_004065.1 | + | 129961 | 0.71 | 0.796128 |
Target: 5'- aGAGGCGCUCAcgcgagcgagggucAGGCUCUgCggaggauaCCGCCc -3' miRNA: 3'- gCUCCGCGAGU--------------UCUGAGA-Gac------GGUGG- -5' |
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15821 | 5' | -55.7 | NC_004065.1 | + | 206794 | 0.71 | 0.798758 |
Target: 5'- gGAGG-GUgUCGGGACucuUCUCUGUCGCCu -3' miRNA: 3'- gCUCCgCG-AGUUCUG---AGAGACGGUGG- -5' |
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15821 | 5' | -55.7 | NC_004065.1 | + | 147559 | 0.7 | 0.807431 |
Target: 5'- uCGAGGUGCUCAGgguGACcCUCgagaagGUCAUCa -3' miRNA: 3'- -GCUCCGCGAGUU---CUGaGAGa-----CGGUGG- -5' |
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15821 | 5' | -55.7 | NC_004065.1 | + | 115990 | 0.7 | 0.815108 |
Target: 5'- aGAGGCGCUCGuccgccgacguGcgccgcgggggcaGCUCUCUGCCGa- -3' miRNA: 3'- gCUCCGCGAGUu----------C-------------UGAGAGACGGUgg -5' |
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15821 | 5' | -55.7 | NC_004065.1 | + | 101594 | 0.7 | 0.824316 |
Target: 5'- cCGccGCGCUC-AGACUCgguggCggcGCCGCCg -3' miRNA: 3'- -GCucCGCGAGuUCUGAGa----Ga--CGGUGG- -5' |
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15821 | 5' | -55.7 | NC_004065.1 | + | 169003 | 0.7 | 0.824316 |
Target: 5'- gGAGGCGacaUCGuGGcCUCUCUGCaCAUCc -3' miRNA: 3'- gCUCCGCg--AGUuCU-GAGAGACG-GUGG- -5' |
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15821 | 5' | -55.7 | NC_004065.1 | + | 117360 | 0.7 | 0.824316 |
Target: 5'- cCGAGGCGUUCAGcguGCagcgCUCUGaCCACg -3' miRNA: 3'- -GCUCCGCGAGUUc--UGa---GAGAC-GGUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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