miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15821 5' -55.7 NC_004065.1 + 63545 0.7 0.840539
Target:  5'- gCGAGcGUGUUCuugguggcggcgGAGACguUCUCgGCCACCa -3'
miRNA:   3'- -GCUC-CGCGAG------------UUCUG--AGAGaCGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 200752 0.7 0.840539
Target:  5'- aCGAGGCgGCUCAcgcgucGGucGCUCUCUcGUCGCg -3'
miRNA:   3'- -GCUCCG-CGAGU------UC--UGAGAGA-CGGUGg -5'
15821 5' -55.7 NC_004065.1 + 205530 0.7 0.848384
Target:  5'- --cGGCGCUCAGGGCcggcggCggUGCCAUCu -3'
miRNA:   3'- gcuCCGCGAGUUCUGa-----GagACGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 36368 0.69 0.856042
Target:  5'- gCGAGuGCGUcgcuaUCGucGCUCUCgcUGCCGCCg -3'
miRNA:   3'- -GCUC-CGCG-----AGUucUGAGAG--ACGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 191226 0.69 0.856042
Target:  5'- aGAGGCGgaUggGGCUCUgCgGgCGCCa -3'
miRNA:   3'- gCUCCGCgaGuuCUGAGA-GaCgGUGG- -5'
15821 5' -55.7 NC_004065.1 + 85795 0.69 0.864245
Target:  5'- cCGAGGCGCgagaaccggcgucggCGAGAgUCUCgaGUCgACCg -3'
miRNA:   3'- -GCUCCGCGa--------------GUUCUgAGAGa-CGG-UGG- -5'
15821 5' -55.7 NC_004065.1 + 122029 0.69 0.884699
Target:  5'- gGGGGCGCUCuucuCUgUCUGuCCGuCCg -3'
miRNA:   3'- gCUCCGCGAGuucuGAgAGAC-GGU-GG- -5'
15821 5' -55.7 NC_004065.1 + 146816 0.69 0.884699
Target:  5'- cCGGcGGCGCgCAcgggGGACUCgagagCggGCCGCCg -3'
miRNA:   3'- -GCU-CCGCGaGU----UCUGAGa----Ga-CGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 159684 0.69 0.884699
Target:  5'- cCGAGGCGCUC------CUC-GCCGCCg -3'
miRNA:   3'- -GCUCCGCGAGuucugaGAGaCGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 118100 0.68 0.891344
Target:  5'- aCGGcGGCGCcCAuGGCgUCUCUcGUCGCCg -3'
miRNA:   3'- -GCU-CCGCGaGUuCUG-AGAGA-CGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 188253 0.68 0.891344
Target:  5'- uCGAGGCGgaCAGGucggcggucaUCUUgGCCACCc -3'
miRNA:   3'- -GCUCCGCgaGUUCug--------AGAGaCGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 5221 0.68 0.897772
Target:  5'- aGAcGGCGgUCGuGAC-CgugCUGCCGCCc -3'
miRNA:   3'- gCU-CCGCgAGUuCUGaGa--GACGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 109677 0.68 0.903982
Target:  5'- -cGGGCGCUCuccGACgacaUC-GCCGCCg -3'
miRNA:   3'- gcUCCGCGAGuu-CUGag--AGaCGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 127620 0.68 0.90879
Target:  5'- --cGGCGCUCuacgugcaccGCUCgcgCUGCCGCUg -3'
miRNA:   3'- gcuCCGCGAGuuc-------UGAGa--GACGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 18774 0.68 0.909969
Target:  5'- aGAGGCGCUCAcagAGAaCUCagacgCggGCUACUc -3'
miRNA:   3'- gCUCCGCGAGU---UCU-GAGa----Ga-CGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 102312 0.68 0.909969
Target:  5'- aGAGGCuGCUCGAGAagUUCUCcGUCgAUCa -3'
miRNA:   3'- gCUCCG-CGAGUUCU--GAGAGaCGG-UGG- -5'
15821 5' -55.7 NC_004065.1 + 35598 0.68 0.915732
Target:  5'- cCGAGGCGCcCGGGgagaACUCcgUCUGgaacgcCCGCCg -3'
miRNA:   3'- -GCUCCGCGaGUUC----UGAG--AGAC------GGUGG- -5'
15821 5' -55.7 NC_004065.1 + 133590 0.68 0.915732
Target:  5'- aGAGGCGCUCGAGGagcgUUGCgAgCg -3'
miRNA:   3'- gCUCCGCGAGUUCUgagaGACGgUgG- -5'
15821 5' -55.7 NC_004065.1 + 110073 0.68 0.92127
Target:  5'- --cGGgGCUCAcGGCcgucCUCUGCCugCu -3'
miRNA:   3'- gcuCCgCGAGUuCUGa---GAGACGGugG- -5'
15821 5' -55.7 NC_004065.1 + 196010 0.68 0.92127
Target:  5'- -cGGGCGUgUCGuuAGcacGCUCUCggGCCACCa -3'
miRNA:   3'- gcUCCGCG-AGU--UC---UGAGAGa-CGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.