miRNA display CGI


Results 41 - 60 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15821 5' -55.7 NC_004065.1 + 173894 0.67 0.941153
Target:  5'- cCGAGGCuGCagAAGGCgagC-GCCGCCg -3'
miRNA:   3'- -GCUCCG-CGagUUCUGagaGaCGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 192718 0.67 0.941153
Target:  5'- --uGGUGC-CGaccggGGGCUCUUgagGCCGCCg -3'
miRNA:   3'- gcuCCGCGaGU-----UCUGAGAGa--CGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 210152 0.67 0.941153
Target:  5'- aCGGGGUGgaUCAGGG-UCUCUaGCaCGCCa -3'
miRNA:   3'- -GCUCCGCg-AGUUCUgAGAGA-CG-GUGG- -5'
15821 5' -55.7 NC_004065.1 + 200558 0.67 0.936522
Target:  5'- aGAGcaccGCGCUCucGAUcgccaaguUCUCcGCCACCu -3'
miRNA:   3'- gCUC----CGCGAGuuCUG--------AGAGaCGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 130335 0.67 0.936522
Target:  5'- -cGGGaGCUCuc-GCUCUUUGUCACCg -3'
miRNA:   3'- gcUCCgCGAGuucUGAGAGACGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 133092 0.67 0.931665
Target:  5'- aGAGGCGCagCGcGAgUCUaacgGUCACCa -3'
miRNA:   3'- gCUCCGCGa-GUuCUgAGAga--CGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 179677 0.67 0.929659
Target:  5'- gGGGGgGCUCGGGAUcgCggcgguggccacgCgUGCCACCa -3'
miRNA:   3'- gCUCCgCGAGUUCUGa-Ga------------G-ACGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 196808 0.67 0.926581
Target:  5'- aCGAGGCGgUgGGGGgUCgugGUCACCu -3'
miRNA:   3'- -GCUCCGCgAgUUCUgAGagaCGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 127497 0.67 0.926581
Target:  5'- aCGAGGa---CAAGGCgcgcgucgucCUCUGCCGCCu -3'
miRNA:   3'- -GCUCCgcgaGUUCUGa---------GAGACGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 111987 0.67 0.926581
Target:  5'- -aAGGCGCUCGAGGgg----GCCGCCu -3'
miRNA:   3'- gcUCCGCGAGUUCUgagagaCGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 196010 0.68 0.92127
Target:  5'- -cGGGCGUgUCGuuAGcacGCUCUCggGCCACCa -3'
miRNA:   3'- gcUCCGCG-AGU--UC---UGAGAGa-CGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 146402 0.68 0.92127
Target:  5'- -aAGGUGCUCGAGcuguACUCgaagggagagCUGCgCGCCu -3'
miRNA:   3'- gcUCCGCGAGUUC----UGAGa---------GACG-GUGG- -5'
15821 5' -55.7 NC_004065.1 + 110073 0.68 0.92127
Target:  5'- --cGGgGCUCAcGGCcgucCUCUGCCugCu -3'
miRNA:   3'- gcuCCgCGAGUuCUGa---GAGACGGugG- -5'
15821 5' -55.7 NC_004065.1 + 84696 0.68 0.92127
Target:  5'- uGAGGCGCccugugUCGAGugUCgCUcGgCACCc -3'
miRNA:   3'- gCUCCGCG------AGUUCugAGaGA-CgGUGG- -5'
15821 5' -55.7 NC_004065.1 + 35598 0.68 0.915732
Target:  5'- cCGAGGCGCcCGGGgagaACUCcgUCUGgaacgcCCGCCg -3'
miRNA:   3'- -GCUCCGCGaGUUC----UGAG--AGAC------GGUGG- -5'
15821 5' -55.7 NC_004065.1 + 133590 0.68 0.915732
Target:  5'- aGAGGCGCUCGAGGagcgUUGCgAgCg -3'
miRNA:   3'- gCUCCGCGAGUUCUgagaGACGgUgG- -5'
15821 5' -55.7 NC_004065.1 + 18774 0.68 0.909969
Target:  5'- aGAGGCGCUCAcagAGAaCUCagacgCggGCUACUc -3'
miRNA:   3'- gCUCCGCGAGU---UCU-GAGa----Ga-CGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 102312 0.68 0.909969
Target:  5'- aGAGGCuGCUCGAGAagUUCUCcGUCgAUCa -3'
miRNA:   3'- gCUCCG-CGAGUUCU--GAGAGaCGG-UGG- -5'
15821 5' -55.7 NC_004065.1 + 127620 0.68 0.90879
Target:  5'- --cGGCGCUCuacgugcaccGCUCgcgCUGCCGCUg -3'
miRNA:   3'- gcuCCGCGAGuuc-------UGAGa--GACGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 109677 0.68 0.903982
Target:  5'- -cGGGCGCUCuccGACgacaUC-GCCGCCg -3'
miRNA:   3'- gcUCCGCGAGuu-CUGag--AGaCGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.