miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15821 5' -55.7 NC_004065.1 + 5221 0.68 0.897772
Target:  5'- aGAcGGCGgUCGuGAC-CgugCUGCCGCCc -3'
miRNA:   3'- gCU-CCGCgAGUuCUGaGa--GACGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 18774 0.68 0.909969
Target:  5'- aGAGGCGCUCAcagAGAaCUCagacgCggGCUACUc -3'
miRNA:   3'- gCUCCGCGAGU---UCU-GAGa----Ga-CGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 27758 0.66 0.949745
Target:  5'- cCGccGCGCaUCGAGACgCUgcGCCGCCg -3'
miRNA:   3'- -GCucCGCG-AGUUCUGaGAgaCGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 32882 0.73 0.695744
Target:  5'- aGAGGCGCgccggCGAG-Cg-UCUGCCGCUg -3'
miRNA:   3'- gCUCCGCGa----GUUCuGagAGACGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 35598 0.68 0.915732
Target:  5'- cCGAGGCGCcCGGGgagaACUCcgUCUGgaacgcCCGCCg -3'
miRNA:   3'- -GCUCCGCGaGUUC----UGAG--AGAC------GGUGG- -5'
15821 5' -55.7 NC_004065.1 + 36368 0.69 0.856042
Target:  5'- gCGAGuGCGUcgcuaUCGucGCUCUCgcUGCCGCCg -3'
miRNA:   3'- -GCUC-CGCG-----AGUucUGAGAG--ACGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 51043 0.66 0.957457
Target:  5'- aCGGGGUGCUCuGGAUggaCUGCgaACCc -3'
miRNA:   3'- -GCUCCGCGAGuUCUGagaGACGg-UGG- -5'
15821 5' -55.7 NC_004065.1 + 53260 0.66 0.960992
Target:  5'- uGGGGCGCg-AGGAgUCUCccgcGUCACUg -3'
miRNA:   3'- gCUCCGCGagUUCUgAGAGa---CGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 57544 0.72 0.724919
Target:  5'- gCGAGGUGCcCGAG-CUCUCUGagauaCACUu -3'
miRNA:   3'- -GCUCCGCGaGUUCuGAGAGACg----GUGG- -5'
15821 5' -55.7 NC_004065.1 + 63545 0.7 0.840539
Target:  5'- gCGAGcGUGUUCuugguggcggcgGAGACguUCUCgGCCACCa -3'
miRNA:   3'- -GCUC-CGCGAG------------UUCUG--AGAGaCGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 75061 0.72 0.715258
Target:  5'- aGAcGUGCUCGAGGCggcugCUCaUGCCGCUc -3'
miRNA:   3'- gCUcCGCGAGUUCUGa----GAG-ACGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 84696 0.68 0.92127
Target:  5'- uGAGGCGCccugugUCGAGugUCgCUcGgCACCc -3'
miRNA:   3'- gCUCCGCG------AGUUCugAGaGA-CgGUGG- -5'
15821 5' -55.7 NC_004065.1 + 85714 0.67 0.94556
Target:  5'- aCGAGGCGCUgAAcGC-CUCgaGCUACg -3'
miRNA:   3'- -GCUCCGCGAgUUcUGaGAGa-CGGUGg -5'
15821 5' -55.7 NC_004065.1 + 85795 0.69 0.864245
Target:  5'- cCGAGGCGCgagaaccggcgucggCGAGAgUCUCgaGUCgACCg -3'
miRNA:   3'- -GCUCCGCGa--------------GUUCUgAGAGa-CGG-UGG- -5'
15821 5' -55.7 NC_004065.1 + 86349 0.78 0.418495
Target:  5'- aGAGGUGUUCGucguagccgAGGCUCUCgGCCACg -3'
miRNA:   3'- gCUCCGCGAGU---------UCUGAGAGaCGGUGg -5'
15821 5' -55.7 NC_004065.1 + 87308 0.66 0.967442
Target:  5'- gCGAGGCGCcCAGGACcCcCga-CGCCg -3'
miRNA:   3'- -GCUCCGCGaGUUCUGaGaGacgGUGG- -5'
15821 5' -55.7 NC_004065.1 + 88503 0.66 0.953709
Target:  5'- gGAGGUGCUCcuGAcCUUgagCUGuCCGCg -3'
miRNA:   3'- gCUCCGCGAGuuCU-GAGa--GAC-GGUGg -5'
15821 5' -55.7 NC_004065.1 + 91818 0.67 0.94556
Target:  5'- aGAGcGCGgUCGAGACg-UCgGUCGCCc -3'
miRNA:   3'- gCUC-CGCgAGUUCUGagAGaCGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 92047 0.66 0.954094
Target:  5'- uGGcGCGCUCGAGGCaUCUCacgcgcgcucggaggGCCGCg -3'
miRNA:   3'- gCUcCGCGAGUUCUG-AGAGa--------------CGGUGg -5'
15821 5' -55.7 NC_004065.1 + 94953 0.66 0.967442
Target:  5'- --uGGCGCUgCGGGGCccgCUCcgcgGCUGCCg -3'
miRNA:   3'- gcuCCGCGA-GUUCUGa--GAGa---CGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.