miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15821 5' -55.7 NC_004065.1 + 101258 0.66 0.964319
Target:  5'- gCGAcGGCGCccUCAAcGCUgCcgCUGCCGCUg -3'
miRNA:   3'- -GCU-CCGCG--AGUUcUGA-Ga-GACGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 101594 0.7 0.824316
Target:  5'- cCGccGCGCUC-AGACUCgguggCggcGCCGCCg -3'
miRNA:   3'- -GCucCGCGAGuUCUGAGa----Ga--CGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 101852 0.66 0.957457
Target:  5'- gGGGGCGUcgGGGGCgCUaucGCCGCCg -3'
miRNA:   3'- gCUCCGCGagUUCUGaGAga-CGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 102312 0.68 0.909969
Target:  5'- aGAGGCuGCUCGAGAagUUCUCcGUCgAUCa -3'
miRNA:   3'- gCUCCG-CGAGUUCU--GAGAGaCGG-UGG- -5'
15821 5' -55.7 NC_004065.1 + 104245 1.11 0.003497
Target:  5'- cCGAGGCGCUCAAGACUCUCUGCCACCc -3'
miRNA:   3'- -GCUCCGCGAGUUCUGAGAGACGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 104330 0.66 0.964319
Target:  5'- gGGGGaugaucgGgUCAGGGCgCUCUGCCGgCg -3'
miRNA:   3'- gCUCCg------CgAGUUCUGaGAGACGGUgG- -5'
15821 5' -55.7 NC_004065.1 + 105036 0.66 0.957457
Target:  5'- uGAGcGCGCUgCAcGACccgcgcCUCUGgCCGCCc -3'
miRNA:   3'- gCUC-CGCGA-GUuCUGa-----GAGAC-GGUGG- -5'
15821 5' -55.7 NC_004065.1 + 106283 0.73 0.676027
Target:  5'- cCGAGGUGCU--GGACUCggagGCCAUCu -3'
miRNA:   3'- -GCUCCGCGAguUCUGAGaga-CGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 109677 0.68 0.903982
Target:  5'- -cGGGCGCUCuccGACgacaUC-GCCGCCg -3'
miRNA:   3'- gcUCCGCGAGuu-CUGag--AGaCGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 110073 0.68 0.92127
Target:  5'- --cGGgGCUCAcGGCcgucCUCUGCCugCu -3'
miRNA:   3'- gcuCCgCGAGUuCUGa---GAGACGGugG- -5'
15821 5' -55.7 NC_004065.1 + 111987 0.67 0.926581
Target:  5'- -aAGGCGCUCGAGGgg----GCCGCCu -3'
miRNA:   3'- gcUCCGCGAGUUCUgagagaCGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 115073 0.66 0.953323
Target:  5'- gCGAGGaCGCggccUCGGucGGCUCUUcugaccagaaaugUGCCGCCc -3'
miRNA:   3'- -GCUCC-GCG----AGUU--CUGAGAG-------------ACGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 115208 0.74 0.636246
Target:  5'- --cGGCGCUCc---CUCUCUGCCGCg -3'
miRNA:   3'- gcuCCGCGAGuucuGAGAGACGGUGg -5'
15821 5' -55.7 NC_004065.1 + 115990 0.7 0.815108
Target:  5'- aGAGGCGCUCGuccgccgacguGcgccgcgggggcaGCUCUCUGCCGa- -3'
miRNA:   3'- gCUCCGCGAGUu----------C-------------UGAGAGACGGUgg -5'
15821 5' -55.7 NC_004065.1 + 117274 0.66 0.949744
Target:  5'- gGAGGCGCacgagccggcgaUCAGGACgaUCUGUCAg- -3'
miRNA:   3'- gCUCCGCG------------AGUUCUGagAGACGGUgg -5'
15821 5' -55.7 NC_004065.1 + 117360 0.7 0.824316
Target:  5'- cCGAGGCGUUCAGcguGCagcgCUCUGaCCACg -3'
miRNA:   3'- -GCUCCGCGAGUUc--UGa---GAGAC-GGUGg -5'
15821 5' -55.7 NC_004065.1 + 118100 0.68 0.891344
Target:  5'- aCGGcGGCGCcCAuGGCgUCUCUcGUCGCCg -3'
miRNA:   3'- -GCU-CCGCGaGUuCUG-AGAGA-CGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 118741 0.66 0.967138
Target:  5'- gGAGGUGUUgAAGAuggucuuCUCUCgGUCACg -3'
miRNA:   3'- gCUCCGCGAgUUCU-------GAGAGaCGGUGg -5'
15821 5' -55.7 NC_004065.1 + 122029 0.69 0.884699
Target:  5'- gGGGGCGCUCuucuCUgUCUGuCCGuCCg -3'
miRNA:   3'- gCUCCGCGAGuucuGAgAGAC-GGU-GG- -5'
15821 5' -55.7 NC_004065.1 + 127497 0.67 0.926581
Target:  5'- aCGAGGa---CAAGGCgcgcgucgucCUCUGCCGCCu -3'
miRNA:   3'- -GCUCCgcgaGUUCUGa---------GAGACGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.