miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15821 5' -55.7 NC_004065.1 + 229487 0.71 0.771914
Target:  5'- gGGGGCGCUCGcacaggGGGCg--C-GCCACCg -3'
miRNA:   3'- gCUCCGCGAGU------UCUGagaGaCGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 229451 0.66 0.953709
Target:  5'- uCGAGGaaCGCUCGcuucacGGCUCUCcggGCCgggcGCCg -3'
miRNA:   3'- -GCUCC--GCGAGUu-----CUGAGAGa--CGG----UGG- -5'
15821 5' -55.7 NC_004065.1 + 217585 0.66 0.967442
Target:  5'- aGAGGUa--CGAGAucgcCUCUCUGCCAUUc -3'
miRNA:   3'- gCUCCGcgaGUUCU----GAGAGACGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 210551 0.66 0.953709
Target:  5'- aCGAugGGCGCUCcaccGACUCcCgucCCACCa -3'
miRNA:   3'- -GCU--CCGCGAGuu--CUGAGaGac-GGUGG- -5'
15821 5' -55.7 NC_004065.1 + 210206 0.66 0.964319
Target:  5'- gGAGcGUGCUUGAGACcgugucccCUgUGCCACg -3'
miRNA:   3'- gCUC-CGCGAGUUCUGa-------GAgACGGUGg -5'
15821 5' -55.7 NC_004065.1 + 210152 0.67 0.941153
Target:  5'- aCGGGGUGgaUCAGGG-UCUCUaGCaCGCCa -3'
miRNA:   3'- -GCUCCGCg-AGUUCUgAGAGA-CG-GUGG- -5'
15821 5' -55.7 NC_004065.1 + 207055 0.66 0.960992
Target:  5'- uCGGGGCGauCUCGGGGgUUUCcGCCucgauGCCg -3'
miRNA:   3'- -GCUCCGC--GAGUUCUgAGAGaCGG-----UGG- -5'
15821 5' -55.7 NC_004065.1 + 206794 0.71 0.798758
Target:  5'- gGAGG-GUgUCGGGACucuUCUCUGUCGCCu -3'
miRNA:   3'- gCUCCgCG-AGUUCUG---AGAGACGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 205530 0.7 0.848384
Target:  5'- --cGGCGCUCAGGGCcggcggCggUGCCAUCu -3'
miRNA:   3'- gcuCCGCGAGUUCUGa-----GagACGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 205479 0.71 0.766409
Target:  5'- aCGAGGgGCUCGu--CUCcgcugccgucgucgCUGCCGCCg -3'
miRNA:   3'- -GCUCCgCGAGUucuGAGa-------------GACGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 203581 0.67 0.941153
Target:  5'- aCGGGaUGCUCAuGGcuuguauguGCUCUCggagGCCGCCg -3'
miRNA:   3'- -GCUCcGCGAGU-UC---------UGAGAGa---CGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 200752 0.7 0.840539
Target:  5'- aCGAGGCgGCUCAcgcgucGGucGCUCUCUcGUCGCg -3'
miRNA:   3'- -GCUCCG-CGAGU------UC--UGAGAGA-CGGUGg -5'
15821 5' -55.7 NC_004065.1 + 200558 0.67 0.936522
Target:  5'- aGAGcaccGCGCUCucGAUcgccaaguUCUCcGCCACCu -3'
miRNA:   3'- gCUC----CGCGAGuuCUG--------AGAGaCGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 200338 0.73 0.666113
Target:  5'- uCGGGGCGC-CGAGGCUCagcaacCUGCCGg- -3'
miRNA:   3'- -GCUCCGCGaGUUCUGAGa-----GACGGUgg -5'
15821 5' -55.7 NC_004065.1 + 199983 0.67 0.941153
Target:  5'- uCGA-GCGC-CGAGAa-CUCcGCCACCa -3'
miRNA:   3'- -GCUcCGCGaGUUCUgaGAGaCGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 198693 0.73 0.666113
Target:  5'- aCGGGGUGUUUAAGGCggcccuggCUCUGUC-CCa -3'
miRNA:   3'- -GCUCCGCGAGUUCUGa-------GAGACGGuGG- -5'
15821 5' -55.7 NC_004065.1 + 196808 0.67 0.926581
Target:  5'- aCGAGGCGgUgGGGGgUCgugGUCACCu -3'
miRNA:   3'- -GCUCCGCgAgUUCUgAGagaCGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 196010 0.68 0.92127
Target:  5'- -cGGGCGUgUCGuuAGcacGCUCUCggGCCACCa -3'
miRNA:   3'- gcUCCGCG-AGU--UC---UGAGAGa-CGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 193365 0.66 0.964319
Target:  5'- --cGGUGCagAGGACaaagUCUCUGCUucuGCCg -3'
miRNA:   3'- gcuCCGCGagUUCUG----AGAGACGG---UGG- -5'
15821 5' -55.7 NC_004065.1 + 192718 0.67 0.941153
Target:  5'- --uGGUGC-CGaccggGGGCUCUUgagGCCGCCg -3'
miRNA:   3'- gcuCCGCGaGU-----UCUGAGAGa--CGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.