miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15821 5' -55.7 NC_004065.1 + 196010 0.68 0.92127
Target:  5'- -cGGGCGUgUCGuuAGcacGCUCUCggGCCACCa -3'
miRNA:   3'- gcUCCGCG-AGU--UC---UGAGAGa-CGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 122029 0.69 0.884699
Target:  5'- gGGGGCGCUCuucuCUgUCUGuCCGuCCg -3'
miRNA:   3'- gCUCCGCGAGuucuGAgAGAC-GGU-GG- -5'
15821 5' -55.7 NC_004065.1 + 159684 0.69 0.884699
Target:  5'- cCGAGGCGCUC------CUC-GCCGCCg -3'
miRNA:   3'- -GCUCCGCGAGuucugaGAGaCGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 118100 0.68 0.891344
Target:  5'- aCGGcGGCGCcCAuGGCgUCUCUcGUCGCCg -3'
miRNA:   3'- -GCU-CCGCGaGUuCUG-AGAGA-CGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 188253 0.68 0.891344
Target:  5'- uCGAGGCGgaCAGGucggcggucaUCUUgGCCACCc -3'
miRNA:   3'- -GCUCCGCgaGUUCug--------AGAGaCGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 109677 0.68 0.903982
Target:  5'- -cGGGCGCUCuccGACgacaUC-GCCGCCg -3'
miRNA:   3'- gcUCCGCGAGuu-CUGag--AGaCGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 127620 0.68 0.90879
Target:  5'- --cGGCGCUCuacgugcaccGCUCgcgCUGCCGCUg -3'
miRNA:   3'- gcuCCGCGAGuuc-------UGAGa--GACGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 102312 0.68 0.909969
Target:  5'- aGAGGCuGCUCGAGAagUUCUCcGUCgAUCa -3'
miRNA:   3'- gCUCCG-CGAGUUCU--GAGAGaCGG-UGG- -5'
15821 5' -55.7 NC_004065.1 + 110073 0.68 0.92127
Target:  5'- --cGGgGCUCAcGGCcgucCUCUGCCugCu -3'
miRNA:   3'- gcuCCgCGAGUuCUGa---GAGACGGugG- -5'
15821 5' -55.7 NC_004065.1 + 85795 0.69 0.864245
Target:  5'- cCGAGGCGCgagaaccggcgucggCGAGAgUCUCgaGUCgACCg -3'
miRNA:   3'- -GCUCCGCGa--------------GUUCUgAGAGa-CGG-UGG- -5'
15821 5' -55.7 NC_004065.1 + 36368 0.69 0.856042
Target:  5'- gCGAGuGCGUcgcuaUCGucGCUCUCgcUGCCGCCg -3'
miRNA:   3'- -GCUC-CGCG-----AGUucUGAGAG--ACGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 200752 0.7 0.840539
Target:  5'- aCGAGGCgGCUCAcgcgucGGucGCUCUCUcGUCGCg -3'
miRNA:   3'- -GCUCCG-CGAGU------UC--UGAGAGA-CGGUGg -5'
15821 5' -55.7 NC_004065.1 + 200338 0.73 0.666113
Target:  5'- uCGGGGCGC-CGAGGCUCagcaacCUGCCGg- -3'
miRNA:   3'- -GCUCCGCGaGUUCUGAGa-----GACGGUgg -5'
15821 5' -55.7 NC_004065.1 + 134791 0.73 0.685906
Target:  5'- gCGAGuucGUGCUCAAGAgUCUCUuCCACg -3'
miRNA:   3'- -GCUC---CGCGAGUUCUgAGAGAcGGUGg -5'
15821 5' -55.7 NC_004065.1 + 75061 0.72 0.715258
Target:  5'- aGAcGUGCUCGAGGCggcugCUCaUGCCGCUc -3'
miRNA:   3'- gCUcCGCGAGUUCUGa----GAG-ACGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 229487 0.71 0.771914
Target:  5'- gGGGGCGCUCGcacaggGGGCg--C-GCCACCg -3'
miRNA:   3'- gCUCCGCGAGU------UCUGagaGaCGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 129961 0.71 0.796128
Target:  5'- aGAGGCGCUCAcgcgagcgagggucAGGCUCUgCggaggauaCCGCCc -3'
miRNA:   3'- gCUCCGCGAGU--------------UCUGAGA-Gac------GGUGG- -5'
15821 5' -55.7 NC_004065.1 + 147559 0.7 0.807431
Target:  5'- uCGAGGUGCUCAGgguGACcCUCgagaagGUCAUCa -3'
miRNA:   3'- -GCUCCGCGAGUU---CUGaGAGa-----CGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 115990 0.7 0.815108
Target:  5'- aGAGGCGCUCGuccgccgacguGcgccgcgggggcaGCUCUCUGCCGa- -3'
miRNA:   3'- gCUCCGCGAGUu----------C-------------UGAGAGACGGUgg -5'
15821 5' -55.7 NC_004065.1 + 63545 0.7 0.840539
Target:  5'- gCGAGcGUGUUCuugguggcggcgGAGACguUCUCgGCCACCa -3'
miRNA:   3'- -GCUC-CGCGAG------------UUCUG--AGAGaCGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.