miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15821 5' -55.7 NC_004065.1 + 104245 1.11 0.003497
Target:  5'- cCGAGGCGCUCAAGACUCUCUGCCACCc -3'
miRNA:   3'- -GCUCCGCGAGUUCUGAGAGACGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 133590 0.68 0.915732
Target:  5'- aGAGGCGCUCGAGGagcgUUGCgAgCg -3'
miRNA:   3'- gCUCCGCGAGUUCUgagaGACGgUgG- -5'
15821 5' -55.7 NC_004065.1 + 84696 0.68 0.92127
Target:  5'- uGAGGCGCccugugUCGAGugUCgCUcGgCACCc -3'
miRNA:   3'- gCUCCGCG------AGUUCugAGaGA-CgGUGG- -5'
15821 5' -55.7 NC_004065.1 + 94953 0.66 0.967442
Target:  5'- --uGGCGCUgCGGGGCccgCUCcgcgGCUGCCg -3'
miRNA:   3'- gcuCCGCGA-GUUCUGa--GAGa---CGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 106283 0.73 0.676027
Target:  5'- cCGAGGUGCU--GGACUCggagGCCAUCu -3'
miRNA:   3'- -GCUCCGCGAguUCUGAGaga-CGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 32882 0.73 0.695744
Target:  5'- aGAGGCGCgccggCGAG-Cg-UCUGCCGCUg -3'
miRNA:   3'- gCUCCGCGa----GUUCuGagAGACGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 205479 0.71 0.766409
Target:  5'- aCGAGGgGCUCGu--CUCcgcugccgucgucgCUGCCGCCg -3'
miRNA:   3'- -GCUCCgCGAGUucuGAGa-------------GACGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 206794 0.71 0.798758
Target:  5'- gGAGG-GUgUCGGGACucuUCUCUGUCGCCu -3'
miRNA:   3'- gCUCCgCG-AGUUCUG---AGAGACGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 169003 0.7 0.824316
Target:  5'- gGAGGCGacaUCGuGGcCUCUCUGCaCAUCc -3'
miRNA:   3'- gCUCCGCg--AGUuCU-GAGAGACG-GUGG- -5'
15821 5' -55.7 NC_004065.1 + 18774 0.68 0.909969
Target:  5'- aGAGGCGCUCAcagAGAaCUCagacgCggGCUACUc -3'
miRNA:   3'- gCUCCGCGAGU---UCU-GAGa----Ga-CGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 191226 0.69 0.856042
Target:  5'- aGAGGCGgaUggGGCUCUgCgGgCGCCa -3'
miRNA:   3'- gCUCCGCgaGuuCUGAGA-GaCgGUGG- -5'
15821 5' -55.7 NC_004065.1 + 117360 0.7 0.824316
Target:  5'- cCGAGGCGUUCAGcguGCagcgCUCUGaCCACg -3'
miRNA:   3'- -GCUCCGCGAGUUc--UGa---GAGAC-GGUGg -5'
15821 5' -55.7 NC_004065.1 + 130585 0.78 0.410002
Target:  5'- gCGAGGCGCgcgaugUCGAGGCggCgUCUGCCGCUc -3'
miRNA:   3'- -GCUCCGCG------AGUUCUGa-G-AGACGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 146816 0.69 0.884699
Target:  5'- cCGGcGGCGCgCAcgggGGACUCgagagCggGCCGCCg -3'
miRNA:   3'- -GCU-CCGCGaGU----UCUGAGa----Ga-CGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 115208 0.74 0.636246
Target:  5'- --cGGCGCUCc---CUCUCUGCCGCg -3'
miRNA:   3'- gcuCCGCGAGuucuGAGAGACGGUGg -5'
15821 5' -55.7 NC_004065.1 + 101594 0.7 0.824316
Target:  5'- cCGccGCGCUC-AGACUCgguggCggcGCCGCCg -3'
miRNA:   3'- -GCucCGCGAGuUCUGAGa----Ga--CGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 5221 0.68 0.897772
Target:  5'- aGAcGGCGgUCGuGAC-CgugCUGCCGCCc -3'
miRNA:   3'- gCU-CCGCgAGUuCUGaGa--GACGGUGG- -5'
15821 5' -55.7 NC_004065.1 + 35598 0.68 0.915732
Target:  5'- cCGAGGCGCcCGGGgagaACUCcgUCUGgaacgcCCGCCg -3'
miRNA:   3'- -GCUCCGCGaGUUC----UGAG--AGAC------GGUGG- -5'
15821 5' -55.7 NC_004065.1 + 198693 0.73 0.666113
Target:  5'- aCGGGGUGUUUAAGGCggcccuggCUCUGUC-CCa -3'
miRNA:   3'- -GCUCCGCGAGUUCUGa-------GAGACGGuGG- -5'
15821 5' -55.7 NC_004065.1 + 57544 0.72 0.724919
Target:  5'- gCGAGGUGCcCGAG-CUCUCUGagauaCACUu -3'
miRNA:   3'- -GCUCCGCGaGUUCuGAGAGACg----GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.