miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15824 3' -54.3 NC_004065.1 + 201301 0.66 0.990006
Target:  5'- gGCGGCcgggggaggaggagaGGAUGAUGGUGGcggGGUG-CUg -3'
miRNA:   3'- gCGCUG---------------UCUGCUGCCACUa--CCACaGG- -5'
15824 3' -54.3 NC_004065.1 + 214418 0.66 0.989501
Target:  5'- gGUGACcu-UGACGGaUGAUGGU-UCCg -3'
miRNA:   3'- gCGCUGucuGCUGCC-ACUACCAcAGG- -5'
15824 3' -54.3 NC_004065.1 + 167539 0.66 0.989501
Target:  5'- aGCGggguccuugguGguGAUGGCGGUGAugauuguguUGGUGUUg -3'
miRNA:   3'- gCGC-----------UguCUGCUGCCACU---------ACCACAGg -5'
15824 3' -54.3 NC_004065.1 + 213293 0.66 0.989501
Target:  5'- gGUGACcguGGACGACGGUuc-GGUcGUCg -3'
miRNA:   3'- gCGCUG---UCUGCUGCCAcuaCCA-CAGg -5'
15824 3' -54.3 NC_004065.1 + 109130 0.66 0.989501
Target:  5'- gGUGGCggGGACGGCgGGUGAcGGcgGuUCCg -3'
miRNA:   3'- gCGCUG--UCUGCUG-CCACUaCCa-C-AGG- -5'
15824 3' -54.3 NC_004065.1 + 117239 0.66 0.989501
Target:  5'- aGCGACAGAC--CGGUGuucaGGUacuucgucuccuGUCCu -3'
miRNA:   3'- gCGCUGUCUGcuGCCACua--CCA------------CAGG- -5'
15824 3' -54.3 NC_004065.1 + 186382 0.66 0.989501
Target:  5'- uGCGACGGcggaggcuGCGuuGGUGGUucGUGUCUg -3'
miRNA:   3'- gCGCUGUC--------UGCugCCACUAc-CACAGG- -5'
15824 3' -54.3 NC_004065.1 + 190624 0.66 0.989501
Target:  5'- cCGUcGgGGAgGAUGGaGGUGGUGUUCu -3'
miRNA:   3'- -GCGcUgUCUgCUGCCaCUACCACAGG- -5'
15824 3' -54.3 NC_004065.1 + 191186 0.66 0.98815
Target:  5'- cCGCGGCAGAUGugGaG-GcUGGggGUCg -3'
miRNA:   3'- -GCGCUGUCUGCugC-CaCuACCa-CAGg -5'
15824 3' -54.3 NC_004065.1 + 20691 0.66 0.98815
Target:  5'- -uCGACAguGAUGAUGGUGAUGGaauaacgaGUCUu -3'
miRNA:   3'- gcGCUGU--CUGCUGCCACUACCa-------CAGG- -5'
15824 3' -54.3 NC_004065.1 + 35573 0.66 0.98815
Target:  5'- gGCGgccACAGGCGGaauCGGUGGcgucggcGGUGUCg -3'
miRNA:   3'- gCGC---UGUCUGCU---GCCACUa------CCACAGg -5'
15824 3' -54.3 NC_004065.1 + 25545 0.66 0.98815
Target:  5'- aGCGACAGACGGCGuc---GGcGUCg -3'
miRNA:   3'- gCGCUGUCUGCUGCcacuaCCaCAGg -5'
15824 3' -54.3 NC_004065.1 + 229659 0.66 0.98815
Target:  5'- gGCGGCAGugG-CaGGUGGgcgucgGGgcgcgcGUCCg -3'
miRNA:   3'- gCGCUGUCugCuG-CCACUa-----CCa-----CAGG- -5'
15824 3' -54.3 NC_004065.1 + 43071 0.66 0.98815
Target:  5'- gCGCGACAGACcgcacguucgGACGGUccgGGcaUCCg -3'
miRNA:   3'- -GCGCUGUCUG----------CUGCCAcuaCCacAGG- -5'
15824 3' -54.3 NC_004065.1 + 167302 0.66 0.98815
Target:  5'- gGUGAUGGugGGauucgugguagUGGUGGUGGUGacgaCCu -3'
miRNA:   3'- gCGCUGUCugCU-----------GCCACUACCACa---GG- -5'
15824 3' -54.3 NC_004065.1 + 207233 0.66 0.987277
Target:  5'- aGCGACGGugGcCGGUcgugaggacgacGAUGGUauauuuuuggcucugGUCUu -3'
miRNA:   3'- gCGCUGUCugCuGCCA------------CUACCA---------------CAGG- -5'
15824 3' -54.3 NC_004065.1 + 120467 0.66 0.986823
Target:  5'- gGCGGCcaccucgaggucgcuGACGACGGUGuc-GUGcCCg -3'
miRNA:   3'- gCGCUGu--------------CUGCUGCCACuacCACaGG- -5'
15824 3' -54.3 NC_004065.1 + 145729 0.66 0.986669
Target:  5'- gGUGGaggAGGCGggaGCGGUGAUGaGUGcgCCg -3'
miRNA:   3'- gCGCUg--UCUGC---UGCCACUAC-CACa-GG- -5'
15824 3' -54.3 NC_004065.1 + 79626 0.66 0.986669
Target:  5'- gCGCGcGCGGACGcuGCGGgcGUGcGUGUCg -3'
miRNA:   3'- -GCGC-UGUCUGC--UGCCacUAC-CACAGg -5'
15824 3' -54.3 NC_004065.1 + 29977 0.66 0.986669
Target:  5'- gGCGGCGGcgGCGGCGGcaGUGGUaucgCCa -3'
miRNA:   3'- gCGCUGUC--UGCUGCCacUACCAca--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.