miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15824 3' -54.3 NC_004065.1 + 22909 0.66 0.985049
Target:  5'- aCGCGGuCAGugGCGGCGGUcGgcGGU-UCCg -3'
miRNA:   3'- -GCGCU-GUC--UGCUGCCA-CuaCCAcAGG- -5'
15824 3' -54.3 NC_004065.1 + 117239 0.66 0.989501
Target:  5'- aGCGACAGAC--CGGUGuucaGGUacuucgucuccuGUCCu -3'
miRNA:   3'- gCGCUGUCUGcuGCCACua--CCA------------CAGG- -5'
15824 3' -54.3 NC_004065.1 + 35624 0.66 0.984879
Target:  5'- gGCGGCGGcgGCGGCGGgGAUgucaucggcgacaGG-GUCCc -3'
miRNA:   3'- gCGCUGUC--UGCUGCCaCUA-------------CCaCAGG- -5'
15824 3' -54.3 NC_004065.1 + 64196 0.66 0.985049
Target:  5'- aGUcGCAGGCGGCGGgcgGAggcaGUGUCg -3'
miRNA:   3'- gCGcUGUCUGCUGCCa--CUac--CACAGg -5'
15824 3' -54.3 NC_004065.1 + 43071 0.66 0.98815
Target:  5'- gCGCGACAGACcgcacguucgGACGGUccgGGcaUCCg -3'
miRNA:   3'- -GCGCUGUCUG----------CUGCCAcuaCCacAGG- -5'
15824 3' -54.3 NC_004065.1 + 229659 0.66 0.98815
Target:  5'- gGCGGCAGugG-CaGGUGGgcgucgGGgcgcgcGUCCg -3'
miRNA:   3'- gCGCUGUCugCuG-CCACUa-----CCa-----CAGG- -5'
15824 3' -54.3 NC_004065.1 + 132112 0.66 0.983284
Target:  5'- gCGCGGCGGuuCGA-GGUGAacgccGG-GUCCa -3'
miRNA:   3'- -GCGCUGUCu-GCUgCCACUa----CCaCAGG- -5'
15824 3' -54.3 NC_004065.1 + 59144 0.66 0.985049
Target:  5'- gCGCGAgGcGACGACGGcGAga--GUCCg -3'
miRNA:   3'- -GCGCUgU-CUGCUGCCaCUaccaCAGG- -5'
15824 3' -54.3 NC_004065.1 + 109229 0.66 0.985049
Target:  5'- gGCGACgggAGACGGCGGcGGUagcGGcGUCg -3'
miRNA:   3'- gCGCUG---UCUGCUGCCaCUA---CCaCAGg -5'
15824 3' -54.3 NC_004065.1 + 201301 0.66 0.990006
Target:  5'- gGCGGCcgggggaggaggagaGGAUGAUGGUGGcggGGUG-CUg -3'
miRNA:   3'- gCGCUG---------------UCUGCUGCCACUa--CCACaGG- -5'
15824 3' -54.3 NC_004065.1 + 213293 0.66 0.989501
Target:  5'- gGUGACcguGGACGACGGUuc-GGUcGUCg -3'
miRNA:   3'- gCGCUG---UCUGCUGCCAcuaCCA-CAGg -5'
15824 3' -54.3 NC_004065.1 + 35573 0.66 0.98815
Target:  5'- gGCGgccACAGGCGGaauCGGUGGcgucggcGGUGUCg -3'
miRNA:   3'- gCGC---UGUCUGCU---GCCACUa------CCACAGg -5'
15824 3' -54.3 NC_004065.1 + 142020 0.66 0.985049
Target:  5'- uCGaCGACGucgucgucGACGACGGUGggGGauucGUCa -3'
miRNA:   3'- -GC-GCUGU--------CUGCUGCCACuaCCa---CAGg -5'
15824 3' -54.3 NC_004065.1 + 67674 0.66 0.986669
Target:  5'- aGCGGCGG-CGGCGGcgGcgGGcccUCCa -3'
miRNA:   3'- gCGCUGUCuGCUGCCa-CuaCCac-AGG- -5'
15824 3' -54.3 NC_004065.1 + 53856 0.66 0.986669
Target:  5'- uCGCGGCGGucGCGcCGG-GAUGGccacUCCg -3'
miRNA:   3'- -GCGCUGUC--UGCuGCCaCUACCac--AGG- -5'
15824 3' -54.3 NC_004065.1 + 25545 0.66 0.98815
Target:  5'- aGCGACAGACGGCGuc---GGcGUCg -3'
miRNA:   3'- gCGCUGUCUGCUGCcacuaCCaCAGg -5'
15824 3' -54.3 NC_004065.1 + 145729 0.66 0.986669
Target:  5'- gGUGGaggAGGCGggaGCGGUGAUGaGUGcgCCg -3'
miRNA:   3'- gCGCUg--UCUGC---UGCCACUAC-CACa-GG- -5'
15824 3' -54.3 NC_004065.1 + 167302 0.66 0.98815
Target:  5'- gGUGAUGGugGGauucgugguagUGGUGGUGGUGacgaCCu -3'
miRNA:   3'- gCGCUGUCugCU-----------GCCACUACCACa---GG- -5'
15824 3' -54.3 NC_004065.1 + 167539 0.66 0.989501
Target:  5'- aGCGggguccuugguGguGAUGGCGGUGAugauuguguUGGUGUUg -3'
miRNA:   3'- gCGC-----------UguCUGCUGCCACU---------ACCACAGg -5'
15824 3' -54.3 NC_004065.1 + 109130 0.66 0.989501
Target:  5'- gGUGGCggGGACGGCgGGUGAcGGcgGuUCCg -3'
miRNA:   3'- gCGCUG--UCUGCUG-CCACUaCCa-C-AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.