Results 1 - 20 of 112 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15824 | 3' | -54.3 | NC_004065.1 | + | 103243 | 1.13 | 0.004625 |
Target: 5'- uCGCGACAGACGACGGUGAUGGUGUCCa -3' miRNA: 3'- -GCGCUGUCUGCUGCCACUACCACAGG- -5' |
|||||||
15824 | 3' | -54.3 | NC_004065.1 | + | 115570 | 0.85 | 0.247875 |
Target: 5'- cCGCGAUggugAGACGGCGGUGGUGGUGg-- -3' miRNA: 3'- -GCGCUG----UCUGCUGCCACUACCACagg -5' |
|||||||
15824 | 3' | -54.3 | NC_004065.1 | + | 141642 | 0.84 | 0.259632 |
Target: 5'- gGCGACGGAgGGCGGUGgcGGUG-CCg -3' miRNA: 3'- gCGCUGUCUgCUGCCACuaCCACaGG- -5' |
|||||||
15824 | 3' | -54.3 | NC_004065.1 | + | 142764 | 0.82 | 0.354789 |
Target: 5'- cCGCGAC-GACGACGGccugcUGGUGGUGgcgCCg -3' miRNA: 3'- -GCGCUGuCUGCUGCC-----ACUACCACa--GG- -5' |
|||||||
15824 | 3' | -54.3 | NC_004065.1 | + | 57469 | 0.81 | 0.386139 |
Target: 5'- gGCGAUGGcGCGGCGGUGGUGGUGagCu -3' miRNA: 3'- gCGCUGUC-UGCUGCCACUACCACagG- -5' |
|||||||
15824 | 3' | -54.3 | NC_004065.1 | + | 104894 | 0.81 | 0.402485 |
Target: 5'- aCGCGGCuGGGCGACGGcgcGGUGGUG-CCg -3' miRNA: 3'- -GCGCUG-UCUGCUGCCa--CUACCACaGG- -5' |
|||||||
15824 | 3' | -54.3 | NC_004065.1 | + | 634 | 0.78 | 0.509 |
Target: 5'- gGCGGCGGAUGugGGUGAgugcGUCCg -3' miRNA: 3'- gCGCUGUCUGCugCCACUaccaCAGG- -5' |
|||||||
15824 | 3' | -54.3 | NC_004065.1 | + | 192281 | 0.78 | 0.547138 |
Target: 5'- gGCGGguGAgGGgGGUGAUGGUGUUg -3' miRNA: 3'- gCGCUguCUgCUgCCACUACCACAGg -5' |
|||||||
15824 | 3' | -54.3 | NC_004065.1 | + | 225163 | 0.78 | 0.547138 |
Target: 5'- gGUGACcgagccgaGGGCGGCGGUGGUGGUGg-- -3' miRNA: 3'- gCGCUG--------UCUGCUGCCACUACCACagg -5' |
|||||||
15824 | 3' | -54.3 | NC_004065.1 | + | 153871 | 0.77 | 0.576324 |
Target: 5'- uCGCGAC-GACGACGGU---GGUGUUCg -3' miRNA: 3'- -GCGCUGuCUGCUGCCAcuaCCACAGG- -5' |
|||||||
15824 | 3' | -54.3 | NC_004065.1 | + | 112179 | 0.76 | 0.615728 |
Target: 5'- aGCcACGGACGACaGGUGAacccgcUGGUGUCg -3' miRNA: 3'- gCGcUGUCUGCUG-CCACU------ACCACAGg -5' |
|||||||
15824 | 3' | -54.3 | NC_004065.1 | + | 1809 | 0.76 | 0.619686 |
Target: 5'- aCGCGGCGgcGAucgcgguucccguggUGACGGUGAucguguUGGUGUCCg -3' miRNA: 3'- -GCGCUGU--CU---------------GCUGCCACU------ACCACAGG- -5' |
|||||||
15824 | 3' | -54.3 | NC_004065.1 | + | 138558 | 0.76 | 0.625625 |
Target: 5'- gGCGGCGGACuGACGGcGAcGGUG-CCg -3' miRNA: 3'- gCGCUGUCUG-CUGCCaCUaCCACaGG- -5' |
|||||||
15824 | 3' | -54.3 | NC_004065.1 | + | 24034 | 0.75 | 0.69462 |
Target: 5'- aCGCGACAGAgGucguCGGUGAggaUGGUGagCg -3' miRNA: 3'- -GCGCUGUCUgCu---GCCACU---ACCACagG- -5' |
|||||||
15824 | 3' | -54.3 | NC_004065.1 | + | 43262 | 0.74 | 0.714011 |
Target: 5'- aCGUGGCGGACGAaGG-GggGGaUGUCCg -3' miRNA: 3'- -GCGCUGUCUGCUgCCaCuaCC-ACAGG- -5' |
|||||||
15824 | 3' | -54.3 | NC_004065.1 | + | 99559 | 0.74 | 0.733141 |
Target: 5'- cCGCGGCGGACGGCcGUGGUGcGUcagGUUCu -3' miRNA: 3'- -GCGCUGUCUGCUGcCACUAC-CA---CAGG- -5' |
|||||||
15824 | 3' | -54.3 | NC_004065.1 | + | 211543 | 0.74 | 0.739763 |
Target: 5'- aCGCGACGaaugcGGCGACGGUGAucgcgaugguaccgUGGUcaGUCUc -3' miRNA: 3'- -GCGCUGU-----CUGCUGCCACU--------------ACCA--CAGG- -5' |
|||||||
15824 | 3' | -54.3 | NC_004065.1 | + | 30167 | 0.74 | 0.760279 |
Target: 5'- uGCGGCAccGACGagugccugcgGCGGUGGUGGccguucugcaggaUGUCCg -3' miRNA: 3'- gCGCUGU--CUGC----------UGCCACUACC-------------ACAGG- -5' |
|||||||
15824 | 3' | -54.3 | NC_004065.1 | + | 71883 | 0.74 | 0.760279 |
Target: 5'- gCGCGACAGACGgcugaacACGGUGAUGaaccugaaacUGUUCg -3' miRNA: 3'- -GCGCUGUCUGC-------UGCCACUACc---------ACAGG- -5' |
|||||||
15824 | 3' | -54.3 | NC_004065.1 | + | 225383 | 0.73 | 0.77035 |
Target: 5'- cCGCGGCGGGggcgcUGGCGcUGAUGGUG-CCg -3' miRNA: 3'- -GCGCUGUCU-----GCUGCcACUACCACaGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home