miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15824 3' -54.3 NC_004065.1 + 67674 0.66 0.986669
Target:  5'- aGCGGCGG-CGGCGGcgGcgGGcccUCCa -3'
miRNA:   3'- gCGCUGUCuGCUGCCa-CuaCCac-AGG- -5'
15824 3' -54.3 NC_004065.1 + 29977 0.66 0.986669
Target:  5'- gGCGGCGGcgGCGGCGGcaGUGGUaucgCCa -3'
miRNA:   3'- gCGCUGUC--UGCUGCCacUACCAca--GG- -5'
15824 3' -54.3 NC_004065.1 + 53856 0.66 0.986669
Target:  5'- uCGCGGCGGucGCGcCGG-GAUGGccacUCCg -3'
miRNA:   3'- -GCGCUGUC--UGCuGCCaCUACCac--AGG- -5'
15824 3' -54.3 NC_004065.1 + 142020 0.66 0.985049
Target:  5'- uCGaCGACGucgucgucGACGACGGUGggGGauucGUCa -3'
miRNA:   3'- -GC-GCUGU--------CUGCUGCCACuaCCa---CAGg -5'
15824 3' -54.3 NC_004065.1 + 109280 0.66 0.985049
Target:  5'- aGCGGCAGGugcugagcaUGACGGUGc-GGUcGUCg -3'
miRNA:   3'- gCGCUGUCU---------GCUGCCACuaCCA-CAGg -5'
15824 3' -54.3 NC_004065.1 + 65330 0.66 0.985049
Target:  5'- gGCGGCGG-CGGCGGcagcagcugcgGGUGGgucgGUCg -3'
miRNA:   3'- gCGCUGUCuGCUGCCa----------CUACCa---CAGg -5'
15824 3' -54.3 NC_004065.1 + 27906 0.66 0.985049
Target:  5'- uGcCGACGGGCgaGugGGUGGUcGUGUUg -3'
miRNA:   3'- gC-GCUGUCUG--CugCCACUAcCACAGg -5'
15824 3' -54.3 NC_004065.1 + 109229 0.66 0.985049
Target:  5'- gGCGACgggAGACGGCGGcGGUagcGGcGUCg -3'
miRNA:   3'- gCGCUG---UCUGCUGCCaCUA---CCaCAGg -5'
15824 3' -54.3 NC_004065.1 + 64196 0.66 0.985049
Target:  5'- aGUcGCAGGCGGCGGgcgGAggcaGUGUCg -3'
miRNA:   3'- gCGcUGUCUGCUGCCa--CUac--CACAGg -5'
15824 3' -54.3 NC_004065.1 + 22909 0.66 0.985049
Target:  5'- aCGCGGuCAGugGCGGCGGUcGgcGGU-UCCg -3'
miRNA:   3'- -GCGCU-GUC--UGCUGCCA-CuaCCAcAGG- -5'
15824 3' -54.3 NC_004065.1 + 59144 0.66 0.985049
Target:  5'- gCGCGAgGcGACGACGGcGAga--GUCCg -3'
miRNA:   3'- -GCGCUgU-CUGCUGCCaCUaccaCAGG- -5'
15824 3' -54.3 NC_004065.1 + 35624 0.66 0.984879
Target:  5'- gGCGGCGGcgGCGGCGGgGAUgucaucggcgacaGG-GUCCc -3'
miRNA:   3'- gCGCUGUC--UGCUGCCaCUA-------------CCaCAGG- -5'
15824 3' -54.3 NC_004065.1 + 132112 0.66 0.983284
Target:  5'- gCGCGGCGGuuCGA-GGUGAacgccGG-GUCCa -3'
miRNA:   3'- -GCGCUGUCu-GCUgCCACUa----CCaCAGG- -5'
15824 3' -54.3 NC_004065.1 + 143144 0.67 0.982151
Target:  5'- cCGCGACcuGCGuCGGUGAUGacGacgaggacuucauccUGUCCg -3'
miRNA:   3'- -GCGCUGucUGCuGCCACUAC--C---------------ACAGG- -5'
15824 3' -54.3 NC_004065.1 + 116824 0.67 0.981365
Target:  5'- cCGgGGCAG-CGugGccGUGAUGGUGg-- -3'
miRNA:   3'- -GCgCUGUCuGCugC--CACUACCACagg -5'
15824 3' -54.3 NC_004065.1 + 128531 0.67 0.981365
Target:  5'- cCGCGGCGu-CGACGGaGAgUGGUGUg- -3'
miRNA:   3'- -GCGCUGUcuGCUGCCaCU-ACCACAgg -5'
15824 3' -54.3 NC_004065.1 + 4375 0.67 0.981365
Target:  5'- gCGCGACGGcgGCGGCGG-GAgccGGagugcUGUUCg -3'
miRNA:   3'- -GCGCUGUC--UGCUGCCaCUa--CC-----ACAGG- -5'
15824 3' -54.3 NC_004065.1 + 153220 0.67 0.981365
Target:  5'- cCGCGACGgcGAUGaACGGUGAUaGcGUUCg -3'
miRNA:   3'- -GCGCUGU--CUGC-UGCCACUAcCaCAGG- -5'
15824 3' -54.3 NC_004065.1 + 67633 0.67 0.981365
Target:  5'- gGCGuucgAGAUGcCGGUGGcgucgagcgGGUGUCCg -3'
miRNA:   3'- gCGCug--UCUGCuGCCACUa--------CCACAGG- -5'
15824 3' -54.3 NC_004065.1 + 8340 0.67 0.979286
Target:  5'- uCGCGAUc--CGGCGGUGAcaaagagagacUGG-GUCCc -3'
miRNA:   3'- -GCGCUGucuGCUGCCACU-----------ACCaCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.