miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15824 3' -54.3 NC_004065.1 + 634 0.78 0.509
Target:  5'- gGCGGCGGAUGugGGUGAgugcGUCCg -3'
miRNA:   3'- gCGCUGUCUGCugCCACUaccaCAGG- -5'
15824 3' -54.3 NC_004065.1 + 1809 0.76 0.619686
Target:  5'- aCGCGGCGgcGAucgcgguucccguggUGACGGUGAucguguUGGUGUCCg -3'
miRNA:   3'- -GCGCUGU--CU---------------GCUGCCACU------ACCACAGG- -5'
15824 3' -54.3 NC_004065.1 + 3228 0.73 0.805716
Target:  5'- uGCGACccGACGugGuuuGUGGUGGUugGUCCu -3'
miRNA:   3'- gCGCUGu-CUGCugC---CACUACCA--CAGG- -5'
15824 3' -54.3 NC_004065.1 + 4375 0.67 0.981365
Target:  5'- gCGCGACGGcgGCGGCGG-GAgccGGagugcUGUUCg -3'
miRNA:   3'- -GCGCUGUC--UGCUGCCaCUa--CC-----ACAGG- -5'
15824 3' -54.3 NC_004065.1 + 5215 0.67 0.972018
Target:  5'- aCG-GACAGACGGCGGUcGUGaccGUGcugCCg -3'
miRNA:   3'- -GCgCUGUCUGCUGCCAcUAC---CACa--GG- -5'
15824 3' -54.3 NC_004065.1 + 6472 0.73 0.805716
Target:  5'- gGCGAU--ACGAUGGUGuuaAUGGUGUUCu -3'
miRNA:   3'- gCGCUGucUGCUGCCAC---UACCACAGG- -5'
15824 3' -54.3 NC_004065.1 + 8340 0.67 0.979286
Target:  5'- uCGCGAUc--CGGCGGUGAcaaagagagacUGG-GUCCc -3'
miRNA:   3'- -GCGCUGucuGCUGCCACU-----------ACCaCAGG- -5'
15824 3' -54.3 NC_004065.1 + 20691 0.66 0.98815
Target:  5'- -uCGACAguGAUGAUGGUGAUGGaauaacgaGUCUu -3'
miRNA:   3'- gcGCUGU--CUGCUGCCACUACCa-------CAGG- -5'
15824 3' -54.3 NC_004065.1 + 22909 0.66 0.985049
Target:  5'- aCGCGGuCAGugGCGGCGGUcGgcGGU-UCCg -3'
miRNA:   3'- -GCGCU-GUC--UGCUGCCA-CuaCCAcAGG- -5'
15824 3' -54.3 NC_004065.1 + 24034 0.75 0.69462
Target:  5'- aCGCGACAGAgGucguCGGUGAggaUGGUGagCg -3'
miRNA:   3'- -GCGCUGUCUgCu---GCCACU---ACCACagG- -5'
15824 3' -54.3 NC_004065.1 + 25545 0.66 0.98815
Target:  5'- aGCGACAGACGGCGuc---GGcGUCg -3'
miRNA:   3'- gCGCUGUCUGCUGCcacuaCCaCAGg -5'
15824 3' -54.3 NC_004065.1 + 26954 0.71 0.868939
Target:  5'- gGUGGaaagauGAUGGCGGUGGUGGUGcgcugCCu -3'
miRNA:   3'- gCGCUgu----CUGCUGCCACUACCACa----GG- -5'
15824 3' -54.3 NC_004065.1 + 27149 0.67 0.972018
Target:  5'- aCGCGAgAGGCG-CGGgGAacucGGUcGUCCu -3'
miRNA:   3'- -GCGCUgUCUGCuGCCaCUa---CCA-CAGG- -5'
15824 3' -54.3 NC_004065.1 + 27906 0.66 0.985049
Target:  5'- uGcCGACGGGCgaGugGGUGGUcGUGUUg -3'
miRNA:   3'- gC-GCUGUCUG--CugCCACUAcCACAGg -5'
15824 3' -54.3 NC_004065.1 + 29977 0.66 0.986669
Target:  5'- gGCGGCGGcgGCGGCGGcaGUGGUaucgCCa -3'
miRNA:   3'- gCGCUGUC--UGCUGCCacUACCAca--GG- -5'
15824 3' -54.3 NC_004065.1 + 30167 0.74 0.760279
Target:  5'- uGCGGCAccGACGagugccugcgGCGGUGGUGGccguucugcaggaUGUCCg -3'
miRNA:   3'- gCGCUGU--CUGC----------UGCCACUACC-------------ACAGG- -5'
15824 3' -54.3 NC_004065.1 + 33217 0.7 0.895971
Target:  5'- uCGCGggcgagguguccGCAGACGAgGGUc-UGGUGUUCg -3'
miRNA:   3'- -GCGC------------UGUCUGCUgCCAcuACCACAGG- -5'
15824 3' -54.3 NC_004065.1 + 35522 0.67 0.977039
Target:  5'- gGCGACGGAgGugGG-GAcGGgcacgGUCg -3'
miRNA:   3'- gCGCUGUCUgCugCCaCUaCCa----CAGg -5'
15824 3' -54.3 NC_004065.1 + 35573 0.66 0.98815
Target:  5'- gGCGgccACAGGCGGaauCGGUGGcgucggcGGUGUCg -3'
miRNA:   3'- gCGC---UGUCUGCU---GCCACUa------CCACAGg -5'
15824 3' -54.3 NC_004065.1 + 35624 0.66 0.984879
Target:  5'- gGCGGCGGcgGCGGCGGgGAUgucaucggcgacaGG-GUCCc -3'
miRNA:   3'- gCGCUGUC--UGCUGCCaCUA-------------CCaCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.