miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15824 3' -54.3 NC_004065.1 + 62366 0.69 0.93493
Target:  5'- uCGaCGGCGGugGCGGCGGgGGUGGUGg-- -3'
miRNA:   3'- -GC-GCUGUC--UGCUGCCaCUACCACagg -5'
15824 3' -54.3 NC_004065.1 + 6472 0.73 0.805716
Target:  5'- gGCGAU--ACGAUGGUGuuaAUGGUGUUCu -3'
miRNA:   3'- gCGCUGucUGCUGCCAC---UACCACAGG- -5'
15824 3' -54.3 NC_004065.1 + 33217 0.7 0.895971
Target:  5'- uCGCGggcgagguguccGCAGACGAgGGUc-UGGUGUUCg -3'
miRNA:   3'- -GCGC------------UGUCUGCUgCCAcuACCACAGG- -5'
15824 3' -54.3 NC_004065.1 + 48108 0.7 0.90821
Target:  5'- gGCGGCGGugGCGGCGGcGGUGG-GaCCu -3'
miRNA:   3'- gCGCUGUC--UGCUGCCaCUACCaCaGG- -5'
15824 3' -54.3 NC_004065.1 + 112309 0.7 0.90821
Target:  5'- gCGCGAgAGacGCGAgGGUGAcgGGUGUa- -3'
miRNA:   3'- -GCGCUgUC--UGCUgCCACUa-CCACAgg -5'
15824 3' -54.3 NC_004065.1 + 77371 0.7 0.919568
Target:  5'- gCGCGACGaGCaccCGGUGAUGGUGg-- -3'
miRNA:   3'- -GCGCUGUcUGcu-GCCACUACCACagg -5'
15824 3' -54.3 NC_004065.1 + 114869 0.7 0.919568
Target:  5'- gCGCGGCGcccGACGACGaUGgcGGUGaCCu -3'
miRNA:   3'- -GCGCUGU---CUGCUGCcACuaCCACaGG- -5'
15824 3' -54.3 NC_004065.1 + 60674 0.69 0.932019
Target:  5'- aGCuGACAGACggcccaccagggcgaGACGGUGAUGGcgcUGcgCCc -3'
miRNA:   3'- gCG-CUGUCUG---------------CUGCCACUACC---ACa-GG- -5'
15824 3' -54.3 NC_004065.1 + 36110 0.69 0.933484
Target:  5'- gGCGGCAacggggccgcugccGGCGGCGGUuGUGGUGg-- -3'
miRNA:   3'- gCGCUGU--------------CUGCUGCCAcUACCACagg -5'
15824 3' -54.3 NC_004065.1 + 225383 0.73 0.77035
Target:  5'- cCGCGGCGGGggcgcUGGCGcUGAUGGUG-CCg -3'
miRNA:   3'- -GCGCUGUCU-----GCUGCcACUACCACaGG- -5'
15824 3' -54.3 NC_004065.1 + 71883 0.74 0.760279
Target:  5'- gCGCGACAGACGgcugaacACGGUGAUGaaccugaaacUGUUCg -3'
miRNA:   3'- -GCGCUGUCUGC-------UGCCACUACc---------ACAGG- -5'
15824 3' -54.3 NC_004065.1 + 211543 0.74 0.739763
Target:  5'- aCGCGACGaaugcGGCGACGGUGAucgcgaugguaccgUGGUcaGUCUc -3'
miRNA:   3'- -GCGCUGU-----CUGCUGCCACU--------------ACCA--CAGG- -5'
15824 3' -54.3 NC_004065.1 + 57469 0.81 0.386139
Target:  5'- gGCGAUGGcGCGGCGGUGGUGGUGagCu -3'
miRNA:   3'- gCGCUGUC-UGCUGCCACUACCACagG- -5'
15824 3' -54.3 NC_004065.1 + 192281 0.78 0.547138
Target:  5'- gGCGGguGAgGGgGGUGAUGGUGUUg -3'
miRNA:   3'- gCGCUguCUgCUgCCACUACCACAGg -5'
15824 3' -54.3 NC_004065.1 + 225163 0.78 0.547138
Target:  5'- gGUGACcgagccgaGGGCGGCGGUGGUGGUGg-- -3'
miRNA:   3'- gCGCUG--------UCUGCUGCCACUACCACagg -5'
15824 3' -54.3 NC_004065.1 + 153871 0.77 0.576324
Target:  5'- uCGCGAC-GACGACGGU---GGUGUUCg -3'
miRNA:   3'- -GCGCUGuCUGCUGCCAcuaCCACAGG- -5'
15824 3' -54.3 NC_004065.1 + 1809 0.76 0.619686
Target:  5'- aCGCGGCGgcGAucgcgguucccguggUGACGGUGAucguguUGGUGUCCg -3'
miRNA:   3'- -GCGCUGU--CU---------------GCUGCCACU------ACCACAGG- -5'
15824 3' -54.3 NC_004065.1 + 138558 0.76 0.625625
Target:  5'- gGCGGCGGACuGACGGcGAcGGUG-CCg -3'
miRNA:   3'- gCGCUGUCUG-CUGCCaCUaCCACaGG- -5'
15824 3' -54.3 NC_004065.1 + 24034 0.75 0.69462
Target:  5'- aCGCGACAGAgGucguCGGUGAggaUGGUGagCg -3'
miRNA:   3'- -GCGCUGUCUgCu---GCCACU---ACCACagG- -5'
15824 3' -54.3 NC_004065.1 + 99559 0.74 0.733141
Target:  5'- cCGCGGCGGACGGCcGUGGUGcGUcagGUUCu -3'
miRNA:   3'- -GCGCUGUCUGCUGcCACUAC-CA---CAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.