Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15824 | 5' | -54.4 | NC_004065.1 | + | 202928 | 0.66 | 0.971164 |
Target: 5'- ----cGAGCCCgGUCGCgAUaCCCUUg -3' miRNA: 3'- cucuuCUCGGGgUAGUGgUA-GGGAAa -5' |
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15824 | 5' | -54.4 | NC_004065.1 | + | 126904 | 0.66 | 0.970877 |
Target: 5'- ----uGAGCCgCCGUCGCCAacgccguUCCCa-- -3' miRNA: 3'- cucuuCUCGG-GGUAGUGGU-------AGGGaaa -5' |
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15824 | 5' | -54.4 | NC_004065.1 | + | 140023 | 0.66 | 0.969413 |
Target: 5'- cGAGAAGcgacGGCUCCGUCGgguucgcucccgucgUCGUCCCUc- -3' miRNA: 3'- -CUCUUC----UCGGGGUAGU---------------GGUAGGGAaa -5' |
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15824 | 5' | -54.4 | NC_004065.1 | + | 131761 | 0.66 | 0.968204 |
Target: 5'- cGAGgcGcGCgCCCAgggcCGCCGUCCCg-- -3' miRNA: 3'- -CUCuuCuCG-GGGUa---GUGGUAGGGaaa -5' |
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15824 | 5' | -54.4 | NC_004065.1 | + | 108005 | 0.66 | 0.965035 |
Target: 5'- aGAGAAGAgcGCCCCcUC-CCGaccUCCCg-- -3' miRNA: 3'- -CUCUUCU--CGGGGuAGuGGU---AGGGaaa -5' |
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15824 | 5' | -54.4 | NC_004065.1 | + | 223471 | 0.66 | 0.96165 |
Target: 5'- gGAGAAGcaccGGUCCCGagACCGUCUCg-- -3' miRNA: 3'- -CUCUUC----UCGGGGUagUGGUAGGGaaa -5' |
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15824 | 5' | -54.4 | NC_004065.1 | + | 51012 | 0.66 | 0.96165 |
Target: 5'- uGAGAGGAGCCCCAgCAggUCuUCCUc-- -3' miRNA: 3'- -CUCUUCUCGGGGUaGU--GGuAGGGaaa -5' |
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15824 | 5' | -54.4 | NC_004065.1 | + | 52290 | 0.66 | 0.958045 |
Target: 5'- aAGAAGGGUcggcgcacacucUCCAUCGCUGUCCCc-- -3' miRNA: 3'- cUCUUCUCG------------GGGUAGUGGUAGGGaaa -5' |
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15824 | 5' | -54.4 | NC_004065.1 | + | 18589 | 0.66 | 0.958045 |
Target: 5'- cGGAGGGGCCUCGuugguguugucgUCACCG-CCCa-- -3' miRNA: 3'- cUCUUCUCGGGGU------------AGUGGUaGGGaaa -5' |
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15824 | 5' | -54.4 | NC_004065.1 | + | 165899 | 0.67 | 0.954214 |
Target: 5'- gGAGGAGaAGCCCUuucugCGCCggCCCg-- -3' miRNA: 3'- -CUCUUC-UCGGGGua---GUGGuaGGGaaa -5' |
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15824 | 5' | -54.4 | NC_004065.1 | + | 43338 | 0.67 | 0.954214 |
Target: 5'- -cGggGAcGCCCCAcgCGCCgcGUCCCc-- -3' miRNA: 3'- cuCuuCU-CGGGGUa-GUGG--UAGGGaaa -5' |
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15824 | 5' | -54.4 | NC_004065.1 | + | 92554 | 0.67 | 0.945861 |
Target: 5'- cGGGAAGA-CCUgGuUCACCAUCCCc-- -3' miRNA: 3'- -CUCUUCUcGGGgU-AGUGGUAGGGaaa -5' |
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15824 | 5' | -54.4 | NC_004065.1 | + | 169329 | 0.67 | 0.945861 |
Target: 5'- cGGgcGcAGCgCCAUCACCGUCUCg-- -3' miRNA: 3'- cUCuuC-UCGgGGUAGUGGUAGGGaaa -5' |
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15824 | 5' | -54.4 | NC_004065.1 | + | 34199 | 0.67 | 0.94586 |
Target: 5'- cGGGcucGAGCgCCGucUCACCGUCCCa-- -3' miRNA: 3'- -CUCuu-CUCGgGGU--AGUGGUAGGGaaa -5' |
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15824 | 5' | -54.4 | NC_004065.1 | + | 107390 | 0.67 | 0.941331 |
Target: 5'- gGAGAGGugacgGGCCUCGUCuCCGUCUCg-- -3' miRNA: 3'- -CUCUUC-----UCGGGGUAGuGGUAGGGaaa -5' |
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15824 | 5' | -54.4 | NC_004065.1 | + | 37690 | 0.67 | 0.941331 |
Target: 5'- cAGAGGAG-CCCGUCA-CGUCCCc-- -3' miRNA: 3'- cUCUUCUCgGGGUAGUgGUAGGGaaa -5' |
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15824 | 5' | -54.4 | NC_004065.1 | + | 115298 | 0.67 | 0.941331 |
Target: 5'- cGGGAGGGCUCCGcCGCCuAUUCCUc- -3' miRNA: 3'- cUCUUCUCGGGGUaGUGG-UAGGGAaa -5' |
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15824 | 5' | -54.4 | NC_004065.1 | + | 77697 | 0.67 | 0.936563 |
Target: 5'- cGAGcguGGGCCCCguguuccuGUCGCCgAUCCCg-- -3' miRNA: 3'- -CUCuu-CUCGGGG--------UAGUGG-UAGGGaaa -5' |
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15824 | 5' | -54.4 | NC_004065.1 | + | 201231 | 0.67 | 0.936563 |
Target: 5'- aGAGGAcccgcGAGCUguucuccuCCGUCACCGUCaCCUUg -3' miRNA: 3'- -CUCUU-----CUCGG--------GGUAGUGGUAG-GGAAa -5' |
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15824 | 5' | -54.4 | NC_004065.1 | + | 34348 | 0.68 | 0.931555 |
Target: 5'- cGAGAGGAGCCUUcccccgaucagGUCACCAguuuaCCCc-- -3' miRNA: 3'- -CUCUUCUCGGGG-----------UAGUGGUa----GGGaaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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