miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15824 5' -54.4 NC_004065.1 + 103278 1.05 0.008936
Target:  5'- cGAGAAGAGCCCCAUCACCAUCCCUUUc -3'
miRNA:   3'- -CUCUUCUCGGGGUAGUGGUAGGGAAA- -5'
15824 5' -54.4 NC_004065.1 + 23233 0.79 0.353522
Target:  5'- aGAGAAGAGUCCCGaCACCcUCCCUc- -3'
miRNA:   3'- -CUCUUCUCGGGGUaGUGGuAGGGAaa -5'
15824 5' -54.4 NC_004065.1 + 127536 0.76 0.523713
Target:  5'- ----uGGGCCCCGUCGCCGUgCCCUg- -3'
miRNA:   3'- cucuuCUCGGGGUAGUGGUA-GGGAaa -5'
15824 5' -54.4 NC_004065.1 + 122637 0.73 0.666059
Target:  5'- gGAGAcGAGgCCCGUCACCucUCCCg-- -3'
miRNA:   3'- -CUCUuCUCgGGGUAGUGGu-AGGGaaa -5'
15824 5' -54.4 NC_004065.1 + 159524 0.73 0.686459
Target:  5'- cGAGAAGGgcGCCgCCAUCGCCuucacgguGUCCCUg- -3'
miRNA:   3'- -CUCUUCU--CGG-GGUAGUGG--------UAGGGAaa -5'
15824 5' -54.4 NC_004065.1 + 222645 0.73 0.696595
Target:  5'- cGAGGAGGGCCCgCGUCAgCGcCCCa-- -3'
miRNA:   3'- -CUCUUCUCGGG-GUAGUgGUaGGGaaa -5'
15824 5' -54.4 NC_004065.1 + 109816 0.7 0.82004
Target:  5'- cGAGAAc-GCCCuCGUCGCCGUCCUg-- -3'
miRNA:   3'- -CUCUUcuCGGG-GUAGUGGUAGGGaaa -5'
15824 5' -54.4 NC_004065.1 + 185487 0.7 0.828576
Target:  5'- cGGGAGGcAGCgCCGcCACCGUCCCc-- -3'
miRNA:   3'- -CUCUUC-UCGgGGUaGUGGUAGGGaaa -5'
15824 5' -54.4 NC_004065.1 + 93394 0.7 0.845099
Target:  5'- -cGAAGAGCUUCAUguuccCACCAUCCUUg- -3'
miRNA:   3'- cuCUUCUCGGGGUA-----GUGGUAGGGAaa -5'
15824 5' -54.4 NC_004065.1 + 60145 0.7 0.853071
Target:  5'- uGAGccuGAGCCugauuccgagcCCGUCACCGUCCCc-- -3'
miRNA:   3'- -CUCuu-CUCGG-----------GGUAGUGGUAGGGaaa -5'
15824 5' -54.4 NC_004065.1 + 170196 0.69 0.875754
Target:  5'- aAGAucGAGCCCCAUCGCCugcacgaggaggAUCUCUc- -3'
miRNA:   3'- cUCUu-CUCGGGGUAGUGG------------UAGGGAaa -5'
15824 5' -54.4 NC_004065.1 + 60040 0.69 0.882882
Target:  5'- ----cGAGCC-CGUCACCGUCCCc-- -3'
miRNA:   3'- cucuuCUCGGgGUAGUGGUAGGGaaa -5'
15824 5' -54.4 NC_004065.1 + 163833 0.69 0.882882
Target:  5'- gGGGggGAGCCCaagCGCCAgaagaCCCa-- -3'
miRNA:   3'- -CUCuuCUCGGGguaGUGGUa----GGGaaa -5'
15824 5' -54.4 NC_004065.1 + 168666 0.69 0.896463
Target:  5'- cGAGGAGAcCCCCAUCuCCGUCUUc-- -3'
miRNA:   3'- -CUCUUCUcGGGGUAGuGGUAGGGaaa -5'
15824 5' -54.4 NC_004065.1 + 182219 0.68 0.909115
Target:  5'- gGAGAAGgaGGCCaCCAUCACCAgCgCUa- -3'
miRNA:   3'- -CUCUUC--UCGG-GGUAGUGGUaGgGAaa -5'
15824 5' -54.4 NC_004065.1 + 127097 0.68 0.926306
Target:  5'- uAGGcAGcAGCUCCGUCGCCGUCCa--- -3'
miRNA:   3'- cUCU-UC-UCGGGGUAGUGGUAGGgaaa -5'
15824 5' -54.4 NC_004065.1 + 34348 0.68 0.931555
Target:  5'- cGAGAGGAGCCUUcccccgaucagGUCACCAguuuaCCCc-- -3'
miRNA:   3'- -CUCUUCUCGGGG-----------UAGUGGUa----GGGaaa -5'
15824 5' -54.4 NC_004065.1 + 201231 0.67 0.936563
Target:  5'- aGAGGAcccgcGAGCUguucuccuCCGUCACCGUCaCCUUg -3'
miRNA:   3'- -CUCUU-----CUCGG--------GGUAGUGGUAG-GGAAa -5'
15824 5' -54.4 NC_004065.1 + 77697 0.67 0.936563
Target:  5'- cGAGcguGGGCCCCguguuccuGUCGCCgAUCCCg-- -3'
miRNA:   3'- -CUCuu-CUCGGGG--------UAGUGG-UAGGGaaa -5'
15824 5' -54.4 NC_004065.1 + 107390 0.67 0.941331
Target:  5'- gGAGAGGugacgGGCCUCGUCuCCGUCUCg-- -3'
miRNA:   3'- -CUCUUC-----UCGGGGUAGuGGUAGGGaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.