miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15824 5' -54.4 NC_004065.1 + 18589 0.66 0.958045
Target:  5'- cGGAGGGGCCUCGuugguguugucgUCACCG-CCCa-- -3'
miRNA:   3'- cUCUUCUCGGGGU------------AGUGGUaGGGaaa -5'
15824 5' -54.4 NC_004065.1 + 23233 0.79 0.353522
Target:  5'- aGAGAAGAGUCCCGaCACCcUCCCUc- -3'
miRNA:   3'- -CUCUUCUCGGGGUaGUGGuAGGGAaa -5'
15824 5' -54.4 NC_004065.1 + 34199 0.67 0.94586
Target:  5'- cGGGcucGAGCgCCGucUCACCGUCCCa-- -3'
miRNA:   3'- -CUCuu-CUCGgGGU--AGUGGUAGGGaaa -5'
15824 5' -54.4 NC_004065.1 + 34348 0.68 0.931555
Target:  5'- cGAGAGGAGCCUUcccccgaucagGUCACCAguuuaCCCc-- -3'
miRNA:   3'- -CUCUUCUCGGGG-----------UAGUGGUa----GGGaaa -5'
15824 5' -54.4 NC_004065.1 + 37690 0.67 0.941331
Target:  5'- cAGAGGAG-CCCGUCA-CGUCCCc-- -3'
miRNA:   3'- cUCUUCUCgGGGUAGUgGUAGGGaaa -5'
15824 5' -54.4 NC_004065.1 + 43338 0.67 0.954214
Target:  5'- -cGggGAcGCCCCAcgCGCCgcGUCCCc-- -3'
miRNA:   3'- cuCuuCU-CGGGGUa-GUGG--UAGGGaaa -5'
15824 5' -54.4 NC_004065.1 + 51012 0.66 0.96165
Target:  5'- uGAGAGGAGCCCCAgCAggUCuUCCUc-- -3'
miRNA:   3'- -CUCUUCUCGGGGUaGU--GGuAGGGaaa -5'
15824 5' -54.4 NC_004065.1 + 52290 0.66 0.958045
Target:  5'- aAGAAGGGUcggcgcacacucUCCAUCGCUGUCCCc-- -3'
miRNA:   3'- cUCUUCUCG------------GGGUAGUGGUAGGGaaa -5'
15824 5' -54.4 NC_004065.1 + 60040 0.69 0.882882
Target:  5'- ----cGAGCC-CGUCACCGUCCCc-- -3'
miRNA:   3'- cucuuCUCGGgGUAGUGGUAGGGaaa -5'
15824 5' -54.4 NC_004065.1 + 60145 0.7 0.853071
Target:  5'- uGAGccuGAGCCugauuccgagcCCGUCACCGUCCCc-- -3'
miRNA:   3'- -CUCuu-CUCGG-----------GGUAGUGGUAGGGaaa -5'
15824 5' -54.4 NC_004065.1 + 77697 0.67 0.936563
Target:  5'- cGAGcguGGGCCCCguguuccuGUCGCCgAUCCCg-- -3'
miRNA:   3'- -CUCuu-CUCGGGG--------UAGUGG-UAGGGaaa -5'
15824 5' -54.4 NC_004065.1 + 92554 0.67 0.945861
Target:  5'- cGGGAAGA-CCUgGuUCACCAUCCCc-- -3'
miRNA:   3'- -CUCUUCUcGGGgU-AGUGGUAGGGaaa -5'
15824 5' -54.4 NC_004065.1 + 93394 0.7 0.845099
Target:  5'- -cGAAGAGCUUCAUguuccCACCAUCCUUg- -3'
miRNA:   3'- cuCUUCUCGGGGUA-----GUGGUAGGGAaa -5'
15824 5' -54.4 NC_004065.1 + 103278 1.05 0.008936
Target:  5'- cGAGAAGAGCCCCAUCACCAUCCCUUUc -3'
miRNA:   3'- -CUCUUCUCGGGGUAGUGGUAGGGAAA- -5'
15824 5' -54.4 NC_004065.1 + 107390 0.67 0.941331
Target:  5'- gGAGAGGugacgGGCCUCGUCuCCGUCUCg-- -3'
miRNA:   3'- -CUCUUC-----UCGGGGUAGuGGUAGGGaaa -5'
15824 5' -54.4 NC_004065.1 + 108005 0.66 0.965035
Target:  5'- aGAGAAGAgcGCCCCcUC-CCGaccUCCCg-- -3'
miRNA:   3'- -CUCUUCU--CGGGGuAGuGGU---AGGGaaa -5'
15824 5' -54.4 NC_004065.1 + 109816 0.7 0.82004
Target:  5'- cGAGAAc-GCCCuCGUCGCCGUCCUg-- -3'
miRNA:   3'- -CUCUUcuCGGG-GUAGUGGUAGGGaaa -5'
15824 5' -54.4 NC_004065.1 + 115298 0.67 0.941331
Target:  5'- cGGGAGGGCUCCGcCGCCuAUUCCUc- -3'
miRNA:   3'- cUCUUCUCGGGGUaGUGG-UAGGGAaa -5'
15824 5' -54.4 NC_004065.1 + 122637 0.73 0.666059
Target:  5'- gGAGAcGAGgCCCGUCACCucUCCCg-- -3'
miRNA:   3'- -CUCUuCUCgGGGUAGUGGu-AGGGaaa -5'
15824 5' -54.4 NC_004065.1 + 126904 0.66 0.970877
Target:  5'- ----uGAGCCgCCGUCGCCAacgccguUCCCa-- -3'
miRNA:   3'- cucuuCUCGG-GGUAGUGGU-------AGGGaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.