Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15824 | 5' | -54.4 | NC_004065.1 | + | 23233 | 0.79 | 0.353522 |
Target: 5'- aGAGAAGAGUCCCGaCACCcUCCCUc- -3' miRNA: 3'- -CUCUUCUCGGGGUaGUGGuAGGGAaa -5' |
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15824 | 5' | -54.4 | NC_004065.1 | + | 202928 | 0.66 | 0.971164 |
Target: 5'- ----cGAGCCCgGUCGCgAUaCCCUUg -3' miRNA: 3'- cucuuCUCGGGgUAGUGgUA-GGGAAa -5' |
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15824 | 5' | -54.4 | NC_004065.1 | + | 126904 | 0.66 | 0.970877 |
Target: 5'- ----uGAGCCgCCGUCGCCAacgccguUCCCa-- -3' miRNA: 3'- cucuuCUCGG-GGUAGUGGU-------AGGGaaa -5' |
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15824 | 5' | -54.4 | NC_004065.1 | + | 140023 | 0.66 | 0.969413 |
Target: 5'- cGAGAAGcgacGGCUCCGUCGgguucgcucccgucgUCGUCCCUc- -3' miRNA: 3'- -CUCUUC----UCGGGGUAGU---------------GGUAGGGAaa -5' |
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15824 | 5' | -54.4 | NC_004065.1 | + | 223471 | 0.66 | 0.96165 |
Target: 5'- gGAGAAGcaccGGUCCCGagACCGUCUCg-- -3' miRNA: 3'- -CUCUUC----UCGGGGUagUGGUAGGGaaa -5' |
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15824 | 5' | -54.4 | NC_004065.1 | + | 52290 | 0.66 | 0.958045 |
Target: 5'- aAGAAGGGUcggcgcacacucUCCAUCGCUGUCCCc-- -3' miRNA: 3'- cUCUUCUCG------------GGGUAGUGGUAGGGaaa -5' |
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15824 | 5' | -54.4 | NC_004065.1 | + | 18589 | 0.66 | 0.958045 |
Target: 5'- cGGAGGGGCCUCGuugguguugucgUCACCG-CCCa-- -3' miRNA: 3'- cUCUUCUCGGGGU------------AGUGGUaGGGaaa -5' |
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15824 | 5' | -54.4 | NC_004065.1 | + | 43338 | 0.67 | 0.954214 |
Target: 5'- -cGggGAcGCCCCAcgCGCCgcGUCCCc-- -3' miRNA: 3'- cuCuuCU-CGGGGUa-GUGG--UAGGGaaa -5' |
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15824 | 5' | -54.4 | NC_004065.1 | + | 34199 | 0.67 | 0.94586 |
Target: 5'- cGGGcucGAGCgCCGucUCACCGUCCCa-- -3' miRNA: 3'- -CUCuu-CUCGgGGU--AGUGGUAGGGaaa -5' |
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15824 | 5' | -54.4 | NC_004065.1 | + | 77697 | 0.67 | 0.936563 |
Target: 5'- cGAGcguGGGCCCCguguuccuGUCGCCgAUCCCg-- -3' miRNA: 3'- -CUCuu-CUCGGGG--------UAGUGG-UAGGGaaa -5' |
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15824 | 5' | -54.4 | NC_004065.1 | + | 201231 | 0.67 | 0.936563 |
Target: 5'- aGAGGAcccgcGAGCUguucuccuCCGUCACCGUCaCCUUg -3' miRNA: 3'- -CUCUU-----CUCGG--------GGUAGUGGUAG-GGAAa -5' |
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15824 | 5' | -54.4 | NC_004065.1 | + | 127536 | 0.76 | 0.523713 |
Target: 5'- ----uGGGCCCCGUCGCCGUgCCCUg- -3' miRNA: 3'- cucuuCUCGGGGUAGUGGUA-GGGAaa -5' |
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15824 | 5' | -54.4 | NC_004065.1 | + | 122637 | 0.73 | 0.666059 |
Target: 5'- gGAGAcGAGgCCCGUCACCucUCCCg-- -3' miRNA: 3'- -CUCUuCUCgGGGUAGUGGu-AGGGaaa -5' |
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15824 | 5' | -54.4 | NC_004065.1 | + | 222645 | 0.73 | 0.696595 |
Target: 5'- cGAGGAGGGCCCgCGUCAgCGcCCCa-- -3' miRNA: 3'- -CUCUUCUCGGG-GUAGUgGUaGGGaaa -5' |
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15824 | 5' | -54.4 | NC_004065.1 | + | 109816 | 0.7 | 0.82004 |
Target: 5'- cGAGAAc-GCCCuCGUCGCCGUCCUg-- -3' miRNA: 3'- -CUCUUcuCGGG-GUAGUGGUAGGGaaa -5' |
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15824 | 5' | -54.4 | NC_004065.1 | + | 163833 | 0.69 | 0.882882 |
Target: 5'- gGGGggGAGCCCaagCGCCAgaagaCCCa-- -3' miRNA: 3'- -CUCuuCUCGGGguaGUGGUa----GGGaaa -5' |
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15824 | 5' | -54.4 | NC_004065.1 | + | 182219 | 0.68 | 0.909115 |
Target: 5'- gGAGAAGgaGGCCaCCAUCACCAgCgCUa- -3' miRNA: 3'- -CUCUUC--UCGG-GGUAGUGGUaGgGAaa -5' |
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15824 | 5' | -54.4 | NC_004065.1 | + | 127097 | 0.68 | 0.926306 |
Target: 5'- uAGGcAGcAGCUCCGUCGCCGUCCa--- -3' miRNA: 3'- cUCU-UC-UCGGGGUAGUGGUAGGgaaa -5' |
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15824 | 5' | -54.4 | NC_004065.1 | + | 131761 | 0.66 | 0.968204 |
Target: 5'- cGAGgcGcGCgCCCAgggcCGCCGUCCCg-- -3' miRNA: 3'- -CUCuuCuCG-GGGUa---GUGGUAGGGaaa -5' |
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15824 | 5' | -54.4 | NC_004065.1 | + | 159524 | 0.73 | 0.686459 |
Target: 5'- cGAGAAGGgcGCCgCCAUCGCCuucacgguGUCCCUg- -3' miRNA: 3'- -CUCUUCU--CGG-GGUAGUGG--------UAGGGAaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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