miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15825 3' -58.1 NC_004065.1 + 78338 0.66 0.912271
Target:  5'- -aCGAuGCAGGGCGccgcGCGCUGGCGg -3'
miRNA:   3'- uaGCUcUGUCCUGUcuc-UGCGGCCGC- -5'
15825 3' -58.1 NC_004065.1 + 35086 0.66 0.912271
Target:  5'- -gCGAGACGGGggcugucucuguGCGagccgguguaucGAGACGgCGGCGc -3'
miRNA:   3'- uaGCUCUGUCC------------UGU------------CUCUGCgGCCGC- -5'
15825 3' -58.1 NC_004065.1 + 94620 0.66 0.912271
Target:  5'- gAUCGGcuccuGACGGGGuCGGGcGCgGCCGGCGc -3'
miRNA:   3'- -UAGCU-----CUGUCCU-GUCUcUG-CGGCCGC- -5'
15825 3' -58.1 NC_004065.1 + 184891 0.66 0.912271
Target:  5'- -aCGAGAgAGGAUcgGGAGcggGCGCCcgGGUGg -3'
miRNA:   3'- uaGCUCUgUCCUG--UCUC---UGCGG--CCGC- -5'
15825 3' -58.1 NC_004065.1 + 89819 0.66 0.912271
Target:  5'- -aCGGaacGACAGGACGGGGGagaagGCCguGGCGu -3'
miRNA:   3'- uaGCU---CUGUCCUGUCUCUg----CGG--CCGC- -5'
15825 3' -58.1 NC_004065.1 + 27259 0.66 0.912271
Target:  5'- uAUCGAagauGACgAGGACgaAGAGAcCGgCGGCGc -3'
miRNA:   3'- -UAGCU----CUG-UCCUG--UCUCU-GCgGCCGC- -5'
15825 3' -58.1 NC_004065.1 + 21968 0.66 0.912271
Target:  5'- cGUCGucGGCAGGACGGuGAgggcCGCCacGGCc -3'
miRNA:   3'- -UAGCu-CUGUCCUGUCuCU----GCGG--CCGc -5'
15825 3' -58.1 NC_004065.1 + 99397 0.66 0.912271
Target:  5'- cUCGAgcGACAGGugcgcucgcaGCAGGGGC-CCGaGCGg -3'
miRNA:   3'- uAGCU--CUGUCC----------UGUCUCUGcGGC-CGC- -5'
15825 3' -58.1 NC_004065.1 + 122457 0.66 0.912271
Target:  5'- cUCG-GGCAGGGuCAGGGugGCguccCGGUa -3'
miRNA:   3'- uAGCuCUGUCCU-GUCUCugCG----GCCGc -5'
15825 3' -58.1 NC_004065.1 + 200852 0.66 0.906456
Target:  5'- --gGAGuuCGGcgucGACGGGGGCGCgGGCGg -3'
miRNA:   3'- uagCUCu-GUC----CUGUCUCUGCGgCCGC- -5'
15825 3' -58.1 NC_004065.1 + 19185 0.66 0.906456
Target:  5'- -cCGAGGCGGGACAccuccGGCcgcucugcgcgaGCCGGUGg -3'
miRNA:   3'- uaGCUCUGUCCUGUcu---CUG------------CGGCCGC- -5'
15825 3' -58.1 NC_004065.1 + 38910 0.66 0.906456
Target:  5'- gGUCGAcGACgguAGGGCGGuuuCGUCGGCa -3'
miRNA:   3'- -UAGCU-CUG---UCCUGUCucuGCGGCCGc -5'
15825 3' -58.1 NC_004065.1 + 130008 0.66 0.906456
Target:  5'- -cCGAGGCAGcGACGa----GCCGGCGa -3'
miRNA:   3'- uaGCUCUGUC-CUGUcucugCGGCCGC- -5'
15825 3' -58.1 NC_004065.1 + 32969 0.66 0.906456
Target:  5'- cGUCGcGGCGGagcauGACGGAGGCcucgcggaccagGCCGGUGa -3'
miRNA:   3'- -UAGCuCUGUC-----CUGUCUCUG------------CGGCCGC- -5'
15825 3' -58.1 NC_004065.1 + 86993 0.66 0.906456
Target:  5'- --aGAGGCgcaGGGACuccGAaacGACGCCGGUGc -3'
miRNA:   3'- uagCUCUG---UCCUGu--CU---CUGCGGCCGC- -5'
15825 3' -58.1 NC_004065.1 + 102410 0.66 0.906456
Target:  5'- cUCGucGAC-GGACgGGAGGaGCCGGCGc -3'
miRNA:   3'- uAGCu-CUGuCCUG-UCUCUgCGGCCGC- -5'
15825 3' -58.1 NC_004065.1 + 100502 0.66 0.906456
Target:  5'- uGUCGuucaGCAGG-UAGuuGCGCCGGCa -3'
miRNA:   3'- -UAGCuc--UGUCCuGUCucUGCGGCCGc -5'
15825 3' -58.1 NC_004065.1 + 29494 0.66 0.906456
Target:  5'- gGUC-AGGCguuccAGGuacuCGGuGACGCCGGCGc -3'
miRNA:   3'- -UAGcUCUG-----UCCu---GUCuCUGCGGCCGC- -5'
15825 3' -58.1 NC_004065.1 + 103702 0.66 0.900424
Target:  5'- -aCG-GugGGcGGCGGGGAgCGCCuGGCGg -3'
miRNA:   3'- uaGCuCugUC-CUGUCUCU-GCGG-CCGC- -5'
15825 3' -58.1 NC_004065.1 + 67666 0.66 0.900424
Target:  5'- uGUCGGGG-AGcGGCGGcGGCGgCGGCGg -3'
miRNA:   3'- -UAGCUCUgUC-CUGUCuCUGCgGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.