miRNA display CGI


Results 1 - 20 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15825 5' -60.2 NC_004065.1 + 161335 0.66 0.857389
Target:  5'- aGCaGCUcCGUCAUCUUCGCCuggcacgacucguacGCCgacuGCGCg -3'
miRNA:   3'- gCG-CGA-GUAGUAGGGGCGG---------------UGG----CGCG- -5'
15825 5' -60.2 NC_004065.1 + 210097 0.66 0.854466
Target:  5'- gGUGUcCGUCGUaaCCaCCGCCACCacCGCu -3'
miRNA:   3'- gCGCGaGUAGUA--GG-GGCGGUGGc-GCG- -5'
15825 5' -60.2 NC_004065.1 + 1108 0.66 0.854466
Target:  5'- -cCGCUCuuUUGUCUCCuCCcCCGCGCg -3'
miRNA:   3'- gcGCGAGu-AGUAGGGGcGGuGGCGCG- -5'
15825 5' -60.2 NC_004065.1 + 122838 0.66 0.854466
Target:  5'- uCGCGCgUC-UUGUCCuuGaCgACCGCGUc -3'
miRNA:   3'- -GCGCG-AGuAGUAGGggC-GgUGGCGCG- -5'
15825 5' -60.2 NC_004065.1 + 6144 0.66 0.854466
Target:  5'- aGCuccuaCUCGUCAUCUCCGUgauCGCCuCGCu -3'
miRNA:   3'- gCGc----GAGUAGUAGGGGCG---GUGGcGCG- -5'
15825 5' -60.2 NC_004065.1 + 186424 0.66 0.854466
Target:  5'- cCGcCGCUCucuuuccuacCGUUgCCGCCGCCGCc- -3'
miRNA:   3'- -GC-GCGAGua--------GUAGgGGCGGUGGCGcg -5'
15825 5' -60.2 NC_004065.1 + 193840 0.66 0.854466
Target:  5'- -cCGC-CAcCAUUCCUGCUGCCGuCGCu -3'
miRNA:   3'- gcGCGaGUaGUAGGGGCGGUGGC-GCG- -5'
15825 5' -60.2 NC_004065.1 + 80085 0.66 0.854466
Target:  5'- cCGUcuGUggAUCAagCCCGCCuccugccgaGCCGCGCg -3'
miRNA:   3'- -GCG--CGagUAGUagGGGCGG---------UGGCGCG- -5'
15825 5' -60.2 NC_004065.1 + 88259 0.66 0.854466
Target:  5'- uCGaaCUCGUCGUCCCC-CCGCaCGuCGUc -3'
miRNA:   3'- -GCgcGAGUAGUAGGGGcGGUG-GC-GCG- -5'
15825 5' -60.2 NC_004065.1 + 97855 0.66 0.853731
Target:  5'- gGUuCUCGUCcgccAUCgCCGCCACCacguccaggcucgGCGCg -3'
miRNA:   3'- gCGcGAGUAG----UAGgGGCGGUGG-------------CGCG- -5'
15825 5' -60.2 NC_004065.1 + 94105 0.66 0.850029
Target:  5'- gGCGCUgCGUUuucucgcuuuuccuuGUCCCaGCCGCUGCa- -3'
miRNA:   3'- gCGCGA-GUAG---------------UAGGGgCGGUGGCGcg -5'
15825 5' -60.2 NC_004065.1 + 117222 0.66 0.847035
Target:  5'- aCGgGCacCGUCuGUUCCgGCUGCUGCGCu -3'
miRNA:   3'- -GCgCGa-GUAG-UAGGGgCGGUGGCGCG- -5'
15825 5' -60.2 NC_004065.1 + 47677 0.66 0.847035
Target:  5'- uCGuCGUcggaaUCGUCGUCCaCCGaccucaugaCGCUGCGCa -3'
miRNA:   3'- -GC-GCG-----AGUAGUAGG-GGCg--------GUGGCGCG- -5'
15825 5' -60.2 NC_004065.1 + 159531 0.66 0.847035
Target:  5'- gGCGCcgcCAUCgccuucacgguGUCCCugaaCGCCGCCGUGa -3'
miRNA:   3'- gCGCGa--GUAG-----------UAGGG----GCGGUGGCGCg -5'
15825 5' -60.2 NC_004065.1 + 127621 0.66 0.847035
Target:  5'- gGCGCUCuacgugCAccgCUCgCGCUGCCGCuGCg -3'
miRNA:   3'- gCGCGAGua----GUa--GGG-GCGGUGGCG-CG- -5'
15825 5' -60.2 NC_004065.1 + 102365 0.66 0.847035
Target:  5'- aCGUGaaCAUgGU-CCCGCCGCCcucgGCGCc -3'
miRNA:   3'- -GCGCgaGUAgUAgGGGCGGUGG----CGCG- -5'
15825 5' -60.2 NC_004065.1 + 168652 0.66 0.842493
Target:  5'- gGCGCggcgaCGUCGUCucguugccguucuugCCCGCUugUGCGg -3'
miRNA:   3'- gCGCGa----GUAGUAG---------------GGGCGGugGCGCg -5'
15825 5' -60.2 NC_004065.1 + 160871 0.66 0.842493
Target:  5'- cCGC-CUCGUCcagcgucgacagcuUCCCCagcaccuugucgGCgCGCCGCGCg -3'
miRNA:   3'- -GCGcGAGUAGu-------------AGGGG------------CG-GUGGCGCG- -5'
15825 5' -60.2 NC_004065.1 + 99410 0.66 0.839432
Target:  5'- uGCGCUCGcagCAggggCCCgagcggcagaCGCCGCCucgacaucGCGCg -3'
miRNA:   3'- gCGCGAGUa--GUa---GGG----------GCGGUGG--------CGCG- -5'
15825 5' -60.2 NC_004065.1 + 21779 0.66 0.839432
Target:  5'- cCGCGUUcCGUCGgcUCCUCgGUCAaaGCGCg -3'
miRNA:   3'- -GCGCGA-GUAGU--AGGGG-CGGUggCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.