miRNA display CGI


Results 1 - 20 of 282 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15828 3' -64.1 NC_004065.1 + 132771 0.65 0.729085
Target:  5'- -cCGGCGCGaaggucgccagaaGCGCCGu--GCG-CCGGa -3'
miRNA:   3'- ccGCCGCGC-------------CGCGGCuguCGCaGGCC- -5'
15828 3' -64.1 NC_004065.1 + 203022 0.65 0.729085
Target:  5'- uGGCGGCGUggaGGCuguuguugcugcuGCUGGCguuguuuuuGGCGagcUCCGGa -3'
miRNA:   3'- -CCGCCGCG---CCG-------------CGGCUG---------UCGC---AGGCC- -5'
15828 3' -64.1 NC_004065.1 + 184872 0.65 0.726404
Target:  5'- gGGCGGCG-GGaCGCCGGgaacgagagaggauCgggagcgGGCGcCCGGg -3'
miRNA:   3'- -CCGCCGCgCC-GCGGCU--------------G-------UCGCaGGCC- -5'
15828 3' -64.1 NC_004065.1 + 90025 0.66 0.724613
Target:  5'- cGGCGGCGUcagcuccacgcucauGGCGaCGGCGGgGUUuuuuucucgCGGa -3'
miRNA:   3'- -CCGCCGCG---------------CCGCgGCUGUCgCAG---------GCC- -5'
15828 3' -64.1 NC_004065.1 + 30877 0.66 0.721025
Target:  5'- cGGCGGguuCGaGCGCCcGCagGGCGUCgGGg -3'
miRNA:   3'- -CCGCCgc-GC-CGCGGcUG--UCGCAGgCC- -5'
15828 3' -64.1 NC_004065.1 + 210595 0.66 0.721025
Target:  5'- aGCaGCGCGGUGCCucCGGCaccUCCGc -3'
miRNA:   3'- cCGcCGCGCCGCGGcuGUCGc--AGGCc -5'
15828 3' -64.1 NC_004065.1 + 135385 0.66 0.721025
Target:  5'- gGGaCGGUGaC-GCGCCGGCcGCGcCCGa -3'
miRNA:   3'- -CC-GCCGC-GcCGCGGCUGuCGCaGGCc -5'
15828 3' -64.1 NC_004065.1 + 66582 0.66 0.721025
Target:  5'- uGGCGaGCGCcugccgcacgauGGaCGCgGACAGgaUCCGGa -3'
miRNA:   3'- -CCGC-CGCG------------CC-GCGgCUGUCgcAGGCC- -5'
15828 3' -64.1 NC_004065.1 + 139657 0.66 0.721025
Target:  5'- aGCuGUGCGGCGCguGCGGCGgCCGc -3'
miRNA:   3'- cCGcCGCGCCGCGgcUGUCGCaGGCc -5'
15828 3' -64.1 NC_004065.1 + 41481 0.66 0.721025
Target:  5'- aGCaGCGU-GCGCCGG-GGCGUCgGGa -3'
miRNA:   3'- cCGcCGCGcCGCGGCUgUCGCAGgCC- -5'
15828 3' -64.1 NC_004065.1 + 43521 0.66 0.71201
Target:  5'- cGGCGGC-CaGGaagaGUCGAuCGGCGUCCc- -3'
miRNA:   3'- -CCGCCGcG-CCg---CGGCU-GUCGCAGGcc -5'
15828 3' -64.1 NC_004065.1 + 112559 0.66 0.71201
Target:  5'- cGGUGGCgGCGaGCgGCCG-CGGag-CCGGa -3'
miRNA:   3'- -CCGCCG-CGC-CG-CGGCuGUCgcaGGCC- -5'
15828 3' -64.1 NC_004065.1 + 101866 0.66 0.71201
Target:  5'- aGCGGCugGCGGC-CCGGCgAGCGUaacgCCa- -3'
miRNA:   3'- cCGCCG--CGCCGcGGCUG-UCGCA----GGcc -5'
15828 3' -64.1 NC_004065.1 + 69110 0.66 0.71201
Target:  5'- cGGUGgacgagcaggacGCGCGGCgcGCCGACAagGUG-CUGGg -3'
miRNA:   3'- -CCGC------------CGCGCCG--CGGCUGU--CGCaGGCC- -5'
15828 3' -64.1 NC_004065.1 + 165387 0.66 0.71201
Target:  5'- cGGCGGaCGCGcG-GUCGAUGGCcuUCUGGa -3'
miRNA:   3'- -CCGCC-GCGC-CgCGGCUGUCGc-AGGCC- -5'
15828 3' -64.1 NC_004065.1 + 201865 0.66 0.71201
Target:  5'- uGGCGGUucaggucguaGcCGGUcacgcagagGCCGAUGGCGUCCc- -3'
miRNA:   3'- -CCGCCG----------C-GCCG---------CGGCUGUCGCAGGcc -5'
15828 3' -64.1 NC_004065.1 + 163282 0.66 0.71201
Target:  5'- -uCGGuCGCGaCGCCGcCGGgGUCCGa -3'
miRNA:   3'- ccGCC-GCGCcGCGGCuGUCgCAGGCc -5'
15828 3' -64.1 NC_004065.1 + 109625 0.66 0.71201
Target:  5'- cGCGGUGCccaccacCGUCGAgGGCGUCCu- -3'
miRNA:   3'- cCGCCGCGcc-----GCGGCUgUCGCAGGcc -5'
15828 3' -64.1 NC_004065.1 + 65555 0.66 0.71201
Target:  5'- --gGGCGCGuCGCCGGCGG-GUCgCGa -3'
miRNA:   3'- ccgCCGCGCcGCGGCUGUCgCAG-GCc -5'
15828 3' -64.1 NC_004065.1 + 103306 0.66 0.711105
Target:  5'- cGGCGGCaggcucaGCGGuCGCCGcaGGCGUa-GGu -3'
miRNA:   3'- -CCGCCG-------CGCC-GCGGCugUCGCAggCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.