miRNA display CGI


Results 21 - 40 of 282 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15828 3' -64.1 NC_004065.1 + 69110 0.66 0.71201
Target:  5'- cGGUGgacgagcaggacGCGCGGCgcGCCGACAagGUG-CUGGg -3'
miRNA:   3'- -CCGC------------CGCGCCG--CGGCUGU--CGCaGGCC- -5'
15828 3' -64.1 NC_004065.1 + 162175 0.66 0.679143
Target:  5'- uGCGGCGCaGCgucuucGCCGugcccuucugcugcgGCGGCacGUCCGGc -3'
miRNA:   3'- cCGCCGCGcCG------CGGC---------------UGUCG--CAGGCC- -5'
15828 3' -64.1 NC_004065.1 + 25553 0.66 0.69382
Target:  5'- -aCGGCGuCGGCGUCGGCcccGCGcCUGa -3'
miRNA:   3'- ccGCCGC-GCCGCGGCUGu--CGCaGGCc -5'
15828 3' -64.1 NC_004065.1 + 165743 0.66 0.692905
Target:  5'- cGC-GCGCcGCGCCuuccaggaacucgGACAGCGUCUGu -3'
miRNA:   3'- cCGcCGCGcCGCGG-------------CUGUCGCAGGCc -5'
15828 3' -64.1 NC_004065.1 + 201865 0.66 0.71201
Target:  5'- uGGCGGUucaggucguaGcCGGUcacgcagagGCCGAUGGCGUCCc- -3'
miRNA:   3'- -CCGCCG----------C-GCCG---------CGGCUGUCGCAGGcc -5'
15828 3' -64.1 NC_004065.1 + 32951 0.66 0.684658
Target:  5'- cGCGGaUGCgGGCGUCGACGucGCGg-CGGa -3'
miRNA:   3'- cCGCC-GCG-CCGCGGCUGU--CGCagGCC- -5'
15828 3' -64.1 NC_004065.1 + 115902 0.66 0.684658
Target:  5'- uGCGGCuCGGgGCCGucguCGGCcucggCCGGc -3'
miRNA:   3'- cCGCCGcGCCgCGGCu---GUCGca---GGCC- -5'
15828 3' -64.1 NC_004065.1 + 74713 0.66 0.684658
Target:  5'- aGGaaGCGCgGGCGCCugcGACaguAGCGUUCGa -3'
miRNA:   3'- -CCgcCGCG-CCGCGG---CUG---UCGCAGGCc -5'
15828 3' -64.1 NC_004065.1 + 108808 0.66 0.69382
Target:  5'- uGGCGGCcguucagccGCGGCaacagGCUGACGGCc-UCGGu -3'
miRNA:   3'- -CCGCCG---------CGCCG-----CGGCUGUCGcaGGCC- -5'
15828 3' -64.1 NC_004065.1 + 75783 0.66 0.67546
Target:  5'- aGGCGGCGguCGGCGagggggagCGGCGGCGaggcacCUGGc -3'
miRNA:   3'- -CCGCCGC--GCCGCg-------GCUGUCGCa-----GGCC- -5'
15828 3' -64.1 NC_004065.1 + 116485 0.66 0.69382
Target:  5'- aGGCgGGCGagcugagcCGGC-CCaGACAGaagaGUCCGGc -3'
miRNA:   3'- -CCG-CCGC--------GCCGcGG-CUGUCg---CAGGCC- -5'
15828 3' -64.1 NC_004065.1 + 135385 0.66 0.721025
Target:  5'- gGGaCGGUGaC-GCGCCGGCcGCGcCCGa -3'
miRNA:   3'- -CC-GCCGC-GcCGCGGCUGuCGCaGGCc -5'
15828 3' -64.1 NC_004065.1 + 41481 0.66 0.721025
Target:  5'- aGCaGCGU-GCGCCGG-GGCGUCgGGa -3'
miRNA:   3'- cCGcCGCGcCGCGGCUgUCGCAGgCC- -5'
15828 3' -64.1 NC_004065.1 + 160610 0.66 0.684658
Target:  5'- aGGuCGGCGCgcaccuGGCGCCccgucGGCAGCuguUCCGc -3'
miRNA:   3'- -CC-GCCGCG------CCGCGG-----CUGUCGc--AGGCc -5'
15828 3' -64.1 NC_004065.1 + 45801 0.66 0.67546
Target:  5'- cGGgGGC-UGGCGCC-ACAcgccGCGUgCGGg -3'
miRNA:   3'- -CCgCCGcGCCGCGGcUGU----CGCAgGCC- -5'
15828 3' -64.1 NC_004065.1 + 163282 0.66 0.71201
Target:  5'- -uCGGuCGCGaCGCCGcCGGgGUCCGa -3'
miRNA:   3'- ccGCC-GCGCcGCGGCuGUCgCAGGCc -5'
15828 3' -64.1 NC_004065.1 + 183706 0.66 0.681902
Target:  5'- uGUGGCGCacguagcccucguaGGCGCCcugaGACAG-GUCCaGGu -3'
miRNA:   3'- cCGCCGCG--------------CCGCGG----CUGUCgCAGG-CC- -5'
15828 3' -64.1 NC_004065.1 + 32864 0.66 0.68374
Target:  5'- aGCuGGCGUcccuggucgagagGcGCGCCGGCgAGCGUCUGc -3'
miRNA:   3'- cCG-CCGCG-------------C-CGCGGCUG-UCGCAGGCc -5'
15828 3' -64.1 NC_004065.1 + 66582 0.66 0.721025
Target:  5'- uGGCGaGCGCcugccgcacgauGGaCGCgGACAGgaUCCGGa -3'
miRNA:   3'- -CCGC-CGCG------------CC-GCGgCUGUCgcAGGCC- -5'
15828 3' -64.1 NC_004065.1 + 197789 0.66 0.684658
Target:  5'- uGGCGGCGa-GU-CCGACGGC-UCCGa -3'
miRNA:   3'- -CCGCCGCgcCGcGGCUGUCGcAGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.