miRNA display CGI


Results 41 - 60 of 282 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15828 3' -64.1 NC_004065.1 + 62704 0.66 0.697473
Target:  5'- cGCGGUcuugggguagcuccuGCGGCGUCGGuCAGUGUaggaGGg -3'
miRNA:   3'- cCGCCG---------------CGCCGCGGCU-GUCGCAgg--CC- -5'
15828 3' -64.1 NC_004065.1 + 113916 0.66 0.69382
Target:  5'- gGGCGGagauCGCGcGUGUCGACgacgcGGCGcUCGGg -3'
miRNA:   3'- -CCGCC----GCGC-CGCGGCUG-----UCGCaGGCC- -5'
15828 3' -64.1 NC_004065.1 + 55855 0.66 0.700209
Target:  5'- aGCGGauccuccguauaguCGauCGGCGUCGAuCGGCGUCCaGGc -3'
miRNA:   3'- cCGCC--------------GC--GCCGCGGCU-GUCGCAGG-CC- -5'
15828 3' -64.1 NC_004065.1 + 88719 0.66 0.69382
Target:  5'- cGCGGCGCGaGCGgCGGaugAGCacGUCCa- -3'
miRNA:   3'- cCGCCGCGC-CGCgGCUg--UCG--CAGGcc -5'
15828 3' -64.1 NC_004065.1 + 69110 0.66 0.71201
Target:  5'- cGGUGgacgagcaggacGCGCGGCgcGCCGACAagGUG-CUGGg -3'
miRNA:   3'- -CCGC------------CGCGCCG--CGGCUGU--CGCaGGCC- -5'
15828 3' -64.1 NC_004065.1 + 22910 0.66 0.69382
Target:  5'- cGCGGUcaGUGGCGgCGGuCGGCGguUCCGu -3'
miRNA:   3'- cCGCCG--CGCCGCgGCU-GUCGC--AGGCc -5'
15828 3' -64.1 NC_004065.1 + 90025 0.66 0.724613
Target:  5'- cGGCGGCGUcagcuccacgcucauGGCGaCGGCGGgGUUuuuuucucgCGGa -3'
miRNA:   3'- -CCGCCGCG---------------CCGCgGCUGUCgCAG---------GCC- -5'
15828 3' -64.1 NC_004065.1 + 210595 0.66 0.721025
Target:  5'- aGCaGCGCGGUGCCucCGGCaccUCCGc -3'
miRNA:   3'- cCGcCGCGCCGCGGcuGUCGc--AGGCc -5'
15828 3' -64.1 NC_004065.1 + 42238 0.66 0.702939
Target:  5'- cGGCGGgG-GGCGCgauaGGgGGUGUCUGa -3'
miRNA:   3'- -CCGCCgCgCCGCGg---CUgUCGCAGGCc -5'
15828 3' -64.1 NC_004065.1 + 38556 0.66 0.684658
Target:  5'- cGCGuGCGUgguGGUGCCGcaccuCGGCGUCgaGGa -3'
miRNA:   3'- cCGC-CGCG---CCGCGGCu----GUCGCAGg-CC- -5'
15828 3' -64.1 NC_004065.1 + 41481 0.66 0.721025
Target:  5'- aGCaGCGU-GCGCCGG-GGCGUCgGGa -3'
miRNA:   3'- cCGcCGCGcCGCGGCUgUCGCAGgCC- -5'
15828 3' -64.1 NC_004065.1 + 135385 0.66 0.721025
Target:  5'- gGGaCGGUGaC-GCGCCGGCcGCGcCCGa -3'
miRNA:   3'- -CC-GCCGC-GcCGCGGCUGuCGCaGGCc -5'
15828 3' -64.1 NC_004065.1 + 66112 0.67 0.619884
Target:  5'- gGGgGGCGacaucaccgaGGCGCUGGC-GCG-CUGGg -3'
miRNA:   3'- -CCgCCGCg---------CCGCGGCUGuCGCaGGCC- -5'
15828 3' -64.1 NC_004065.1 + 43723 0.67 0.635658
Target:  5'- aGCGGCGCacaGGUacacgaugGCCGAgGGUuucauccgcuccguGUCCGGg -3'
miRNA:   3'- cCGCCGCG---CCG--------CGGCUgUCG--------------CAGGCC- -5'
15828 3' -64.1 NC_004065.1 + 128760 0.67 0.629162
Target:  5'- aGCGGCaGCGGCagcGuuGAgGGCGccgucgCCGGc -3'
miRNA:   3'- cCGCCG-CGCCG---CggCUgUCGCa-----GGCC- -5'
15828 3' -64.1 NC_004065.1 + 112970 0.67 0.626378
Target:  5'- cGCGGCcgaacguucgcugaaGGCGCgGuGCAGCGUCuCGGu -3'
miRNA:   3'- cCGCCGcg-------------CCGCGgC-UGUCGCAG-GCC- -5'
15828 3' -64.1 NC_004065.1 + 143115 0.67 0.619884
Target:  5'- cGC-GCGCGcCGCCGAgGGCGagaCCGGc -3'
miRNA:   3'- cCGcCGCGCcGCGGCUgUCGCa--GGCC- -5'
15828 3' -64.1 NC_004065.1 + 200848 0.67 0.619884
Target:  5'- cGGUGGaguuCGGCGUCGACGGgGgCgCGGg -3'
miRNA:   3'- -CCGCCgc--GCCGCGGCUGUCgCaG-GCC- -5'
15828 3' -64.1 NC_004065.1 + 66725 0.67 0.638442
Target:  5'- aGGCuGGCGCccGUGCCGucggaccccgGCGGCGUCgCGa -3'
miRNA:   3'- -CCG-CCGCGc-CGCGGC----------UGUCGCAG-GCc -5'
15828 3' -64.1 NC_004065.1 + 102398 0.67 0.637514
Target:  5'- aGCGGCagcgcgaGCGGUGCaCGuAgAGCG-CCGGu -3'
miRNA:   3'- cCGCCG-------CGCCGCG-GC-UgUCGCaGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.