miRNA display CGI


Results 61 - 80 of 282 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15828 3' -64.1 NC_004065.1 + 112860 0.67 0.656984
Target:  5'- gGGCGGacccCGuCGGCGCUGuCGGUG-CCGu -3'
miRNA:   3'- -CCGCC----GC-GCCGCGGCuGUCGCaGGCc -5'
15828 3' -64.1 NC_004065.1 + 64142 0.67 0.660686
Target:  5'- cGGCaGCGCGuGCGgccucgccuucgggaCCGugAGagacCGUCCGGc -3'
miRNA:   3'- -CCGcCGCGC-CGC---------------GGCugUC----GCAGGCC- -5'
15828 3' -64.1 NC_004065.1 + 63864 0.67 0.665309
Target:  5'- cGCGGUGCagacgucGGCGCCGcugccgcCGGCG-CCGa -3'
miRNA:   3'- cCGCCGCG-------CCGCGGCu------GUCGCaGGCc -5'
15828 3' -64.1 NC_004065.1 + 59322 0.67 0.666234
Target:  5'- aGCGGCaaucGCGcCGCgGGCGGCGUgCGa -3'
miRNA:   3'- cCGCCG----CGCcGCGgCUGUCGCAgGCc -5'
15828 3' -64.1 NC_004065.1 + 164191 0.67 0.666234
Target:  5'- cGUGcGCGCGGaucucCGCCGGCAucGCGUUCa- -3'
miRNA:   3'- cCGC-CGCGCC-----GCGGCUGU--CGCAGGcc -5'
15828 3' -64.1 NC_004065.1 + 102398 0.67 0.637514
Target:  5'- aGCGGCagcgcgaGCGGUGCaCGuAgAGCG-CCGGu -3'
miRNA:   3'- cCGCCG-------CGCCGCG-GC-UgUCGCaGGCC- -5'
15828 3' -64.1 NC_004065.1 + 34107 0.67 0.656984
Target:  5'- -uCGGCGauaaaGCGCCGGCAGaacgaGUCCGc -3'
miRNA:   3'- ccGCCGCgc---CGCGGCUGUCg----CAGGCc -5'
15828 3' -64.1 NC_004065.1 + 513 0.67 0.666234
Target:  5'- aGGCGGgGUgaGGCGCCccgcCAGCGUgUGa -3'
miRNA:   3'- -CCGCCgCG--CCGCGGcu--GUCGCAgGCc -5'
15828 3' -64.1 NC_004065.1 + 112970 0.67 0.626378
Target:  5'- cGCGGCcgaacguucgcugaaGGCGCgGuGCAGCGUCuCGGu -3'
miRNA:   3'- cCGCCGcg-------------CCGCGgC-UGUCGCAG-GCC- -5'
15828 3' -64.1 NC_004065.1 + 124181 0.67 0.647718
Target:  5'- gGGUGuGCGCgcaGGcCGCCGAguagcacgagaaCGGCGUgCGGu -3'
miRNA:   3'- -CCGC-CGCG---CC-GCGGCU------------GUCGCAgGCC- -5'
15828 3' -64.1 NC_004065.1 + 43053 0.67 0.646791
Target:  5'- cGGCuucucgaGGCGuCGGCG-CGACAGaccgcaCGUUCGGa -3'
miRNA:   3'- -CCG-------CCGC-GCCGCgGCUGUC------GCAGGCC- -5'
15828 3' -64.1 NC_004065.1 + 162643 0.67 0.638442
Target:  5'- uGGCcucGGCGCccagccuaGGCGUgucuagacuCGACcgcGCGUCCGGa -3'
miRNA:   3'- -CCG---CCGCG--------CCGCG---------GCUGu--CGCAGGCC- -5'
15828 3' -64.1 NC_004065.1 + 36109 0.67 0.638442
Target:  5'- uGGCGGCaacGgGGCcgcuGCCGGCGGCGguugUGGu -3'
miRNA:   3'- -CCGCCG---CgCCG----CGGCUGUCGCag--GCC- -5'
15828 3' -64.1 NC_004065.1 + 45603 0.67 0.644009
Target:  5'- gGGgGGCGCGGgacgaggggaacgGUCGAgacaCGGCGUCCGc -3'
miRNA:   3'- -CCgCCGCGCCg------------CGGCU----GUCGCAGGCc -5'
15828 3' -64.1 NC_004065.1 + 64293 0.67 0.637514
Target:  5'- --aGGCGCGGCGCgCGucucggacauccaACAGgGUCUGc -3'
miRNA:   3'- ccgCCGCGCCGCG-GC-------------UGUCgCAGGCc -5'
15828 3' -64.1 NC_004065.1 + 43723 0.67 0.635658
Target:  5'- aGCGGCGCacaGGUacacgaugGCCGAgGGUuucauccgcuccguGUCCGGg -3'
miRNA:   3'- cCGCCGCG---CCG--------CGGCUgUCG--------------CAGGCC- -5'
15828 3' -64.1 NC_004065.1 + 128760 0.67 0.629162
Target:  5'- aGCGGCaGCGGCagcGuuGAgGGCGccgucgCCGGc -3'
miRNA:   3'- cCGCCG-CGCCG---CggCUgUCGCa-----GGCC- -5'
15828 3' -64.1 NC_004065.1 + 143115 0.67 0.619884
Target:  5'- cGC-GCGCGcCGCCGAgGGCGagaCCGGc -3'
miRNA:   3'- cCGcCGCGCcGCGGCUgUCGCa--GGCC- -5'
15828 3' -64.1 NC_004065.1 + 66112 0.67 0.619884
Target:  5'- gGGgGGCGacaucaccgaGGCGCUGGC-GCG-CUGGg -3'
miRNA:   3'- -CCgCCGCg---------CCGCGGCUGuCGCaGGCC- -5'
15828 3' -64.1 NC_004065.1 + 154017 0.67 0.619884
Target:  5'- cGCGGCgGCGGCGgCGACGuUGUCaucgagaGGu -3'
miRNA:   3'- cCGCCG-CGCCGCgGCUGUcGCAGg------CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.