Results 41 - 60 of 282 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15828 | 3' | -64.1 | NC_004065.1 | + | 70336 | 0.74 | 0.297162 |
Target: 5'- cGGCGGCGaCGGCGgCGAgGaGCGcCuCGGg -3' miRNA: 3'- -CCGCCGC-GCCGCgGCUgU-CGCaG-GCC- -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 143270 | 0.74 | 0.290961 |
Target: 5'- cGGCgGGgGCGGCagcuucaaggGCCGagGCGGCGUCgGGg -3' miRNA: 3'- -CCG-CCgCGCCG----------CGGC--UGUCGCAGgCC- -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 64202 | 0.74 | 0.272966 |
Target: 5'- aGGCGGCG-GGCGgaGGCAGUGUCggCGGc -3' miRNA: 3'- -CCGCCGCgCCGCggCUGUCGCAG--GCC- -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 128419 | 0.74 | 0.275313 |
Target: 5'- aGCGGCgGCGGCGCCGccaccgagucugagcGCggcggaGGCGUCCGcGg -3' miRNA: 3'- cCGCCG-CGCCGCGGC---------------UG------UCGCAGGC-C- -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 70114 | 0.73 | 0.303465 |
Target: 5'- -cCGGCaGCGGCGgCGGCGGCG-CCGa -3' miRNA: 3'- ccGCCG-CGCCGCgGCUGUCGCaGGCc -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 161844 | 0.73 | 0.343436 |
Target: 5'- aGCGGCG-GG-GCCGACAGC-UCCGu -3' miRNA: 3'- cCGCCGCgCCgCGGCUGUCGcAGGCc -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 55775 | 0.73 | 0.336518 |
Target: 5'- uGGCGGUcuCGGCGCCGAgcaGGCGaUCgCGGc -3' miRNA: 3'- -CCGCCGc-GCCGCGGCUg--UCGC-AG-GCC- -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 163488 | 0.73 | 0.32299 |
Target: 5'- cGGCGGCGcCGGUGgCGGCGGCuucaauucUUCGGa -3' miRNA: 3'- -CCGCCGC-GCCGCgGCUGUCGc-------AGGCC- -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 27286 | 0.73 | 0.309871 |
Target: 5'- cGGCGGCGC--CGCCGACGacGCGUCUa- -3' miRNA: 3'- -CCGCCGCGccGCGGCUGU--CGCAGGcc -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 136660 | 0.73 | 0.34274 |
Target: 5'- uGGUGGCGagcgacgGGCgggucugGCCGGCGGCGggCCGGc -3' miRNA: 3'- -CCGCCGCg------CCG-------CGGCUGUCGCa-GGCC- -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 136610 | 0.73 | 0.329027 |
Target: 5'- uGGgGuGCGgGGCGCUgguccgaGGCGGCGgUCCGGa -3' miRNA: 3'- -CCgC-CGCgCCGCGG-------CUGUCGC-AGGCC- -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 165083 | 0.73 | 0.32299 |
Target: 5'- aGGCGGUGggucaguaGGCGCCGucgucucugagGCGGCGUCCc- -3' miRNA: 3'- -CCGCCGCg-------CCGCGGC-----------UGUCGCAGGcc -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 127646 | 0.72 | 0.357576 |
Target: 5'- uGCcGCuGCGGCGCCGAgGGCGg-CGGg -3' miRNA: 3'- cCGcCG-CGCCGCGGCUgUCGCagGCC- -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 127134 | 0.72 | 0.379541 |
Target: 5'- cGCGGCgGCGGCGCuacCGGCGGCGgcgaucgcccUCuCGGu -3' miRNA: 3'- cCGCCG-CGCCGCG---GCUGUCGC----------AG-GCC- -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 120893 | 0.72 | 0.371383 |
Target: 5'- gGGCGGCGUcucGCGgCGACAGCacccgcaGUCCGu -3' miRNA: 3'- -CCGCCGCGc--CGCgGCUGUCG-------CAGGCc -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 91203 | 0.72 | 0.37212 |
Target: 5'- cGGCGuGCGCGGCaUCGGCGcCG-CCGGa -3' miRNA: 3'- -CCGC-CGCGCCGcGGCUGUcGCaGGCC- -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 24845 | 0.72 | 0.37212 |
Target: 5'- cGCGGCGCccgauguuGGCGgCGACGGCGgccucgaCGGu -3' miRNA: 3'- cCGCCGCG--------CCGCgGCUGUCGCag-----GCC- -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 197250 | 0.72 | 0.37212 |
Target: 5'- aGCGG-GUGGCguGCCGAUAGgGUgCCGGa -3' miRNA: 3'- cCGCCgCGCCG--CGGCUGUCgCA-GGCC- -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 109870 | 0.72 | 0.379541 |
Target: 5'- gGGCGGUGCcaccGGCGUcgccgCGGCcGCGUCgGGg -3' miRNA: 3'- -CCGCCGCG----CCGCG-----GCUGuCGCAGgCC- -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 96273 | 0.72 | 0.357576 |
Target: 5'- uGGaCGGCGgGGCgGCCaGgGGCGUCaCGGa -3' miRNA: 3'- -CC-GCCGCgCCG-CGGcUgUCGCAG-GCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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