miRNA display CGI


Results 1 - 20 of 282 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15828 3' -64.1 NC_004065.1 + 99667 1.11 0.00087
Target:  5'- cGGCGGCGCGGCGCCGACAGCGUCCGGu -3'
miRNA:   3'- -CCGCCGCGCCGCGGCUGUCGCAGGCC- -5'
15828 3' -64.1 NC_004065.1 + 76738 0.86 0.044559
Target:  5'- cGGCggggacgGGCGCGGCGCCGGCGGCcucgucaucGUCCGGc -3'
miRNA:   3'- -CCG-------CCGCGCCGCGGCUGUCG---------CAGGCC- -5'
15828 3' -64.1 NC_004065.1 + 31915 0.86 0.048095
Target:  5'- cGCGGCGCGuCGCCGACAGCGUgCCGa -3'
miRNA:   3'- cCGCCGCGCcGCGGCUGUCGCA-GGCc -5'
15828 3' -64.1 NC_004065.1 + 116323 0.82 0.084288
Target:  5'- cGGCGGCgGCaGCGgCGACGGCGUCgGGa -3'
miRNA:   3'- -CCGCCG-CGcCGCgGCUGUCGCAGgCC- -5'
15828 3' -64.1 NC_004065.1 + 166155 0.82 0.087814
Target:  5'- cGGCGGCaGCGGCGCCGACGucgugcaccgcgauGUGUCUGa -3'
miRNA:   3'- -CCGCCG-CGCCGCGGCUGU--------------CGCAGGCc -5'
15828 3' -64.1 NC_004065.1 + 80380 0.81 0.10688
Target:  5'- uGCGGCGCGuGCagggccuGCCGACGGCG-CCGGu -3'
miRNA:   3'- cCGCCGCGC-CG-------CGGCUGUCGCaGGCC- -5'
15828 3' -64.1 NC_004065.1 + 79356 0.8 0.120634
Target:  5'- gGGCGGCGCGGCGCUGgaACAGUucgagaUCUGGg -3'
miRNA:   3'- -CCGCCGCGCCGCGGC--UGUCGc-----AGGCC- -5'
15828 3' -64.1 NC_004065.1 + 59740 0.8 0.126464
Target:  5'- cGGCGGCGaUGGUGCCGACcGCGUggCCGa -3'
miRNA:   3'- -CCGCCGC-GCCGCGGCUGuCGCA--GGCc -5'
15828 3' -64.1 NC_004065.1 + 154155 0.78 0.156055
Target:  5'- cGGUGGCgGCGGCGgCGGCGGCGgcuguugCUGGc -3'
miRNA:   3'- -CCGCCG-CGCCGCgGCUGUCGCa------GGCC- -5'
15828 3' -64.1 NC_004065.1 + 163639 0.78 0.156055
Target:  5'- aGCGGCgGCGGCGgCGGCAGCGgcagCGGa -3'
miRNA:   3'- cCGCCG-CGCCGCgGCUGUCGCag--GCC- -5'
15828 3' -64.1 NC_004065.1 + 168561 0.78 0.163432
Target:  5'- aGCGGCgGCGGCGgCGACagcgGGCGUCuCGGc -3'
miRNA:   3'- cCGCCG-CGCCGCgGCUG----UCGCAG-GCC- -5'
15828 3' -64.1 NC_004065.1 + 59572 0.78 0.163432
Target:  5'- cGGCGGCaGCgaaGGCGCCuccGGCGGCGUCCu- -3'
miRNA:   3'- -CCGCCG-CG---CCGCGG---CUGUCGCAGGcc -5'
15828 3' -64.1 NC_004065.1 + 78670 0.78 0.171121
Target:  5'- aGCGGC-CGGCGCCG-CGGCGcCCGa -3'
miRNA:   3'- cCGCCGcGCCGCGGCuGUCGCaGGCc -5'
15828 3' -64.1 NC_004065.1 + 223246 0.77 0.175086
Target:  5'- aGGCGGUGUGGUaGUCGGCuGCGUuuGGu -3'
miRNA:   3'- -CCGCCGCGCCG-CGGCUGuCGCAggCC- -5'
15828 3' -64.1 NC_004065.1 + 152306 0.77 0.183262
Target:  5'- cGGCGGCgGCGGUGCCGGCGGgGacgaugaCGGc -3'
miRNA:   3'- -CCGCCG-CGCCGCGGCUGUCgCag-----GCC- -5'
15828 3' -64.1 NC_004065.1 + 101538 0.77 0.18705
Target:  5'- aGGCGGCagcagcaGCGGCGCUGGCAGUGguagCCu- -3'
miRNA:   3'- -CCGCCG-------CGCCGCGGCUGUCGCa---GGcc -5'
15828 3' -64.1 NC_004065.1 + 151359 0.77 0.187475
Target:  5'- gGGCGcCGCGGCGCCGGCcgcuGCG-CUGGc -3'
miRNA:   3'- -CCGCcGCGCCGCGGCUGu---CGCaGGCC- -5'
15828 3' -64.1 NC_004065.1 + 200787 0.77 0.187475
Target:  5'- cGCGGCgGUGGCgGgCGACGGCGUCuCGGc -3'
miRNA:   3'- cCGCCG-CGCCG-CgGCUGUCGCAG-GCC- -5'
15828 3' -64.1 NC_004065.1 + 35572 0.77 0.190475
Target:  5'- aGGCGGCcacaggcggaaucgGUGGCGUCGGCGGUGUCggugCGGg -3'
miRNA:   3'- -CCGCCG--------------CGCCGCGGCUGUCGCAG----GCC- -5'
15828 3' -64.1 NC_004065.1 + 80797 0.77 0.191773
Target:  5'- cGGCGGCgGCGGCGgCGGCAGCGg---- -3'
miRNA:   3'- -CCGCCG-CGCCGCgGCUGUCGCaggcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.