miRNA display CGI


Results 21 - 40 of 282 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15828 3' -64.1 NC_004065.1 + 171961 0.77 0.191773
Target:  5'- gGGCGGUgGCGGCGgCGGCGGCGga-GGg -3'
miRNA:   3'- -CCGCCG-CGCCGCgGCUGUCGCaggCC- -5'
15828 3' -64.1 NC_004065.1 + 29976 0.76 0.200629
Target:  5'- uGGCGGCgGCGGCGgCGGCAGUGguaucgCCa- -3'
miRNA:   3'- -CCGCCG-CGCCGCgGCUGUCGCa-----GGcc -5'
15828 3' -64.1 NC_004065.1 + 198026 0.76 0.200629
Target:  5'- aGGCGGuCGCGGuCGCCGGCGGU-UCCa- -3'
miRNA:   3'- -CCGCC-GCGCC-GCGGCUGUCGcAGGcc -5'
15828 3' -64.1 NC_004065.1 + 48104 0.76 0.205189
Target:  5'- uGGCGGCgGCGGUGgCGGCGGCGg-UGGg -3'
miRNA:   3'- -CCGCCG-CGCCGCgGCUGUCGCagGCC- -5'
15828 3' -64.1 NC_004065.1 + 163263 0.76 0.205189
Target:  5'- cGGCGGCGcCGGCGCCucCucGCGauUCCGGu -3'
miRNA:   3'- -CCGCCGC-GCCGCGGcuGu-CGC--AGGCC- -5'
15828 3' -64.1 NC_004065.1 + 139851 0.76 0.205189
Target:  5'- aGGCgGGCGaCGGCGgaGGCGGCGgagCCGGc -3'
miRNA:   3'- -CCG-CCGC-GCCGCggCUGUCGCa--GGCC- -5'
15828 3' -64.1 NC_004065.1 + 156300 0.76 0.21941
Target:  5'- cGGCGGCagcaGUGGCGCCaGCAGCGgcggCGGa -3'
miRNA:   3'- -CCGCCG----CGCCGCGGcUGUCGCag--GCC- -5'
15828 3' -64.1 NC_004065.1 + 67749 0.76 0.224335
Target:  5'- aGCGGCGCcGCGuCCGACGGCGUgacgaaCGGc -3'
miRNA:   3'- cCGCCGCGcCGC-GGCUGUCGCAg-----GCC- -5'
15828 3' -64.1 NC_004065.1 + 68543 0.75 0.234465
Target:  5'- aGGCGGCgGCGGaGgUGACGGCGUCCc- -3'
miRNA:   3'- -CCGCCG-CGCCgCgGCUGUCGCAGGcc -5'
15828 3' -64.1 NC_004065.1 + 83420 0.75 0.239672
Target:  5'- -aCGGCGUccagGGUGUCGACGGCGUugCCGGg -3'
miRNA:   3'- ccGCCGCG----CCGCGGCUGUCGCA--GGCC- -5'
15828 3' -64.1 NC_004065.1 + 104162 0.75 0.239672
Target:  5'- cGGCGGUGuCGGuCGCCGcuuCGGUG-CCGGa -3'
miRNA:   3'- -CCGCCGC-GCC-GCGGCu--GUCGCaGGCC- -5'
15828 3' -64.1 NC_004065.1 + 225389 0.75 0.250377
Target:  5'- cGGgGGCGCuGGCGCUGAUGGUG-CCGc -3'
miRNA:   3'- -CCgCCGCG-CCGCGGCUGUCGCaGGCc -5'
15828 3' -64.1 NC_004065.1 + 74667 0.74 0.26717
Target:  5'- cGCGGCGCGucCGCCGuagcGCAGgGUCCGa -3'
miRNA:   3'- cCGCCGCGCc-GCGGC----UGUCgCAGGCc -5'
15828 3' -64.1 NC_004065.1 + 59716 0.74 0.26717
Target:  5'- aGCGGcCGCGGCGCaCGGCGacCGUCgCGGa -3'
miRNA:   3'- cCGCC-GCGCCGCG-GCUGUc-GCAG-GCC- -5'
15828 3' -64.1 NC_004065.1 + 187404 0.74 0.26717
Target:  5'- cGCGGUGUGGCGUCGAgGGCGagCGc -3'
miRNA:   3'- cCGCCGCGCCGCGGCUgUCGCagGCc -5'
15828 3' -64.1 NC_004065.1 + 138821 0.74 0.26717
Target:  5'- cGGCGGCGCcGaugccgcgcaCGCCGACGGCGcuUCCGcGg -3'
miRNA:   3'- -CCGCCGCGcC----------GCGGCUGUCGC--AGGC-C- -5'
15828 3' -64.1 NC_004065.1 + 64202 0.74 0.272966
Target:  5'- aGGCGGCG-GGCGgaGGCAGUGUCggCGGc -3'
miRNA:   3'- -CCGCCGCgCCGCggCUGUCGCAG--GCC- -5'
15828 3' -64.1 NC_004065.1 + 104902 0.74 0.272966
Target:  5'- gGGCgacGGCGCGGUgguGCCGGCGGCGUacaCGc -3'
miRNA:   3'- -CCG---CCGCGCCG---CGGCUGUCGCAg--GCc -5'
15828 3' -64.1 NC_004065.1 + 77111 0.74 0.272966
Target:  5'- cGGCGGCaGCGcCGCCGACAuCGUCagaCGGg -3'
miRNA:   3'- -CCGCCG-CGCcGCGGCUGUcGCAG---GCC- -5'
15828 3' -64.1 NC_004065.1 + 128419 0.74 0.275313
Target:  5'- aGCGGCgGCGGCGCCGccaccgagucugagcGCggcggaGGCGUCCGcGg -3'
miRNA:   3'- cCGCCG-CGCCGCGGC---------------UG------UCGCAGGC-C- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.