miRNA display CGI


Results 41 - 60 of 282 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15828 3' -64.1 NC_004065.1 + 186905 0.74 0.278863
Target:  5'- cGGCGGUcuucGCGaGCGCgGAuCGGCG-CCGGg -3'
miRNA:   3'- -CCGCCG----CGC-CGCGgCU-GUCGCaGGCC- -5'
15828 3' -64.1 NC_004065.1 + 184483 0.74 0.290346
Target:  5'- gGGCGGCugccgccgccgccGCGGCGCCGGguGgcguagacCGUCCGa -3'
miRNA:   3'- -CCGCCG-------------CGCCGCGGCUguC--------GCAGGCc -5'
15828 3' -64.1 NC_004065.1 + 143270 0.74 0.290961
Target:  5'- cGGCgGGgGCGGCagcuucaaggGCCGagGCGGCGUCgGGg -3'
miRNA:   3'- -CCG-CCgCGCCG----------CGGC--UGUCGCAGgCC- -5'
15828 3' -64.1 NC_004065.1 + 70336 0.74 0.297162
Target:  5'- cGGCGGCGaCGGCGgCGAgGaGCGcCuCGGg -3'
miRNA:   3'- -CCGCCGC-GCCGCgGCUgU-CGCaG-GCC- -5'
15828 3' -64.1 NC_004065.1 + 70114 0.73 0.303465
Target:  5'- -cCGGCaGCGGCGgCGGCGGCG-CCGa -3'
miRNA:   3'- ccGCCG-CGCCGCgGCUGUCGCaGGCc -5'
15828 3' -64.1 NC_004065.1 + 27286 0.73 0.309871
Target:  5'- cGGCGGCGC--CGCCGACGacGCGUCUa- -3'
miRNA:   3'- -CCGCCGCGccGCGGCUGU--CGCAGGcc -5'
15828 3' -64.1 NC_004065.1 + 165083 0.73 0.32299
Target:  5'- aGGCGGUGggucaguaGGCGCCGucgucucugagGCGGCGUCCc- -3'
miRNA:   3'- -CCGCCGCg-------CCGCGGC-----------UGUCGCAGGcc -5'
15828 3' -64.1 NC_004065.1 + 163488 0.73 0.32299
Target:  5'- cGGCGGCGcCGGUGgCGGCGGCuucaauucUUCGGa -3'
miRNA:   3'- -CCGCCGC-GCCGCgGCUGUCGc-------AGGCC- -5'
15828 3' -64.1 NC_004065.1 + 136610 0.73 0.329027
Target:  5'- uGGgGuGCGgGGCGCUgguccgaGGCGGCGgUCCGGa -3'
miRNA:   3'- -CCgC-CGCgCCGCGG-------CUGUCGC-AGGCC- -5'
15828 3' -64.1 NC_004065.1 + 55775 0.73 0.336518
Target:  5'- uGGCGGUcuCGGCGCCGAgcaGGCGaUCgCGGc -3'
miRNA:   3'- -CCGCCGc-GCCGCGGCUg--UCGC-AG-GCC- -5'
15828 3' -64.1 NC_004065.1 + 136660 0.73 0.34274
Target:  5'- uGGUGGCGagcgacgGGCgggucugGCCGGCGGCGggCCGGc -3'
miRNA:   3'- -CCGCCGCg------CCG-------CGGCUGUCGCa-GGCC- -5'
15828 3' -64.1 NC_004065.1 + 161844 0.73 0.343436
Target:  5'- aGCGGCG-GG-GCCGACAGC-UCCGu -3'
miRNA:   3'- cCGCCGCgCCgCGGCUGUCGcAGGCc -5'
15828 3' -64.1 NC_004065.1 + 153641 0.72 0.349749
Target:  5'- cGGCGGCgagcucauccgcgGCGGCGCCGGC-GCGa-UGGa -3'
miRNA:   3'- -CCGCCG-------------CGCCGCGGCUGuCGCagGCC- -5'
15828 3' -64.1 NC_004065.1 + 120012 0.72 0.350456
Target:  5'- cGGCGG-GCGGUGCCGGCuGaagCUGGa -3'
miRNA:   3'- -CCGCCgCGCCGCGGCUGuCgcaGGCC- -5'
15828 3' -64.1 NC_004065.1 + 127646 0.72 0.357576
Target:  5'- uGCcGCuGCGGCGCCGAgGGCGg-CGGg -3'
miRNA:   3'- cCGcCG-CGCCGCGGCUgUCGCagGCC- -5'
15828 3' -64.1 NC_004065.1 + 4381 0.72 0.357576
Target:  5'- cGGCGGCgGCGGgaGCCgGAguGCuGUUCGGa -3'
miRNA:   3'- -CCGCCG-CGCCg-CGG-CUguCG-CAGGCC- -5'
15828 3' -64.1 NC_004065.1 + 65329 0.72 0.357576
Target:  5'- cGGCGGCgGCGGCGgCaGCAGC-UgCGGg -3'
miRNA:   3'- -CCGCCG-CGCCGCgGcUGUCGcAgGCC- -5'
15828 3' -64.1 NC_004065.1 + 96273 0.72 0.357576
Target:  5'- uGGaCGGCGgGGCgGCCaGgGGCGUCaCGGa -3'
miRNA:   3'- -CC-GCCGCgCCG-CGGcUgUCGCAG-GCC- -5'
15828 3' -64.1 NC_004065.1 + 119840 0.72 0.357576
Target:  5'- cGGCGGCGCGucGCgGCCGccGCAGagGUCgGGg -3'
miRNA:   3'- -CCGCCGCGC--CG-CGGC--UGUCg-CAGgCC- -5'
15828 3' -64.1 NC_004065.1 + 28471 0.72 0.364798
Target:  5'- aGCGGCgaguuGUGGCgucugGCCGACAGCGcCgCGGa -3'
miRNA:   3'- cCGCCG-----CGCCG-----CGGCUGUCGCaG-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.